{ "type": "genome", "identifier": "GCF_014873145.1", "organism": "Nonomuraea angiospora", "title": "Nonomuraea angiospora", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014873145.1", "bioproject": "PRJNA224116", "biosample": "SAMN15740458", "wgs_master": "JADBEK000000000.1", "refseq_category": "reference genome", "taxid": "46172", "species_taxid": "46172", "organism_name": "Nonomuraea angiospora", "infraspecific_name": "strain=DSM 43173", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/10/09", "asm_name": "ASM1487314v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_014873145.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/873/145/GCF_014873145.1_ASM1487314v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "13093168", "genome_size_ungapped": "13093168", "gc_percent": "71.000000", "replicon_count": "0", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014873145.1-RS_2024_03_24", "annotation_date": "2024-03-24", "total_gene_count": "12026", "protein_coding_gene_count": "11828", "non_coding_gene_count": "83", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-10-09", "dateModified": "2020-10-09", "datePublished": "2020-10-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Nonomuraea angiospora" ], "sample_taxid": [ "46172" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "3.512 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 10.3, "strain_heterogeneity": 44.44, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "13093168", "Number of Sequences": "1", "Longest Sequences (bp)": "13093168", "N50 (bp)": "13093168", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "70.9", "Number of CDSs": "12228", "Average Protein Length": "321.7", "Coding Ratio (%)": "90.1", "Number of rRNAs": "15", "Number of tRNAs": "88", "Number of CRISPRs": "5" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nonomuraea angiospora", "strain": "strain=DSM 43173", "accession": "GCA_014873145.1", "taxid": 46172, "species_taxid": 46172, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 4363, "total_fragments": 4364, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Nonomuraea jabiensis", "strain": "strain=DSM 45507", "accession": "GCA_014204795.1", "taxid": 882448, "species_taxid": 882448, "relation_to_type": "type", "validated": true, "ani": 94.8784, "matched_fragments": 3556, "total_fragments": 4364, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea phyllanthi", "strain": "strain=PA1-10", "accession": "GCA_006334985.2", "taxid": 2219224, "species_taxid": 2219224, "relation_to_type": "type", "validated": true, "ani": 87.7403, "matched_fragments": 2528, "total_fragments": 4364, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea phyllanthi", "strain": "strain=WYY166", "accession": "GCA_009497075.1", "taxid": 2219224, "species_taxid": 2219224, "relation_to_type": "type", "validated": true, "ani": 87.7114, "matched_fragments": 2557, "total_fragments": 4364, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea basaltis", "strain": "strain=160415", "accession": "GCA_005893125.1", "taxid": 2495887, "species_taxid": 2495887, "relation_to_type": "type", "validated": true, "ani": 86.3556, "matched_fragments": 2573, "total_fragments": 4364, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea zeae", "strain": "strain=DSM 100528", "accession": "GCA_005889725.1", "taxid": 1642303, "species_taxid": 1642303, "relation_to_type": "type", "validated": true, "ani": 86.2986, "matched_fragments": 2620, "total_fragments": 4364, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea turkmeniaca", "strain": "strain=DSM 43926", "accession": "GCA_005889735.1", "taxid": 103838, "species_taxid": 103838, "relation_to_type": "type", "validated": true, "ani": 86.1174, "matched_fragments": 2278, "total_fragments": 4364, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea solani", "strain": 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46180, "species_taxid": 46180, "relation_to_type": "type", "validated": true, "ani": 85.7786, "matched_fragments": 2735, "total_fragments": 4364, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea diastatica", "strain": "strain=KC712", "accession": "GCA_004349015.1", "taxid": 1848329, "species_taxid": 1848329, "relation_to_type": "type", "validated": true, "ani": 85.71, "matched_fragments": 2277, "total_fragments": 4364, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea fuscirosea", "strain": "strain=CGMCC 4.7104", "accession": "GCA_003001935.1", "taxid": 1291556, "species_taxid": 1291556, "relation_to_type": "type", "validated": true, "ani": 85.4177, "matched_fragments": 2587, "total_fragments": 4364, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea spiralis", "strain": "strain=JCM 3286", "accession": "GCA_014648435.1", "taxid": 46182, "species_taxid": 46182, "relation_to_type": "type", 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