{ "type": "genome", "identifier": "GCF_014873535.1", "organism": "Nonomuraea africana", "title": "Nonomuraea africana", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014873535.1", "bioproject": "PRJNA224116", "biosample": "SAMN15740147", "wgs_master": "JADBEF000000000.1", "refseq_category": "reference genome", "taxid": "46171", "species_taxid": "46171", "organism_name": "Nonomuraea africana", "infraspecific_name": "strain=DSM 43748", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/10/09", "asm_name": "ASM1487353v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_014873535.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/873/535/GCF_014873535.1_ASM1487353v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "9694534", "genome_size_ungapped": "9694534", "gc_percent": "70.500000", "replicon_count": "0", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014873535.1-RS_2024_03_24", "annotation_date": "2024-03-24", "total_gene_count": "9359", "protein_coding_gene_count": "9120", "non_coding_gene_count": "88", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-10-09", "dateModified": "2020-10-09", "datePublished": "2020-10-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Nonomuraea africana" ], "sample_taxid": [ "46171" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "2.609 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 6.6, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "9694534", "Number of Sequences": "2", "Longest Sequences (bp)": "9573171", "N50 (bp)": "9573171", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "70.3", "Number of CDSs": "9466", "Average Protein Length": "305.6", "Coding Ratio (%)": "89.5", "Number of rRNAs": "18", "Number of tRNAs": "78", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nonomuraea africana", "strain": "strain=DSM 43748", "accession": "GCA_014873535.1", "taxid": 46171, "species_taxid": 46171, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 3231, "total_fragments": 3231, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Nonomuraea dietziae", "strain": "strain=DSM 44320", "accession": "GCA_014195505.1", "taxid": 65515, "species_taxid": 65515, "relation_to_type": "type", "validated": true, "ani": 91.0009, "matched_fragments": 2471, "total_fragments": 3231, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea muscovyensis", "strain": "strain=DSM 45913", "accession": "GCA_014207745.1", "taxid": 1124761, "species_taxid": 1124761, "relation_to_type": "type", "validated": true, "ani": 82.2526, "matched_fragments": 1759, "total_fragments": 3231, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea rhizosphaerae", "strain": "strain=CGMCC 4.7431", "accession": "GCA_019396405.1", "taxid": 2665663, "species_taxid": 2665663, "relation_to_type": "type", "validated": true, "ani": 82.2374, "matched_fragments": 1126, "total_fragments": 3231, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea cavernae", "strain": "strain=SYSU K10005", "accession": "GCA_020215905.1", "taxid": 2045107, "species_taxid": 2045107, "relation_to_type": "type", "validated": true, "ani": 82.1171, "matched_fragments": 1503, "total_fragments": 3231, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea cavernae", "strain": "strain=CGMCC 4.7368", "accession": "GCA_014646355.1", "taxid": 2045107, "species_taxid": 2045107, "relation_to_type": "type", "validated": true, "ani": 82.1166, "matched_fragments": 1493, "total_fragments": 3231, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea roseoviolacea subsp. carminata", "strain": "strain=DSM 44170", "accession": "GCA_024172185.1", "taxid": 160689, "species_taxid": 103837, "relation_to_type": "type", "validated": true, "ani": 81.9714, "matched_fragments": 1752, "total_fragments": 3231, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea aurantiaca", "strain": "strain=NEAU-L178", "accession": "GCA_020215705.1", "taxid": 2878562, "species_taxid": 2878562, "relation_to_type": "type", "validated": true, "ani": 81.9141, "matched_fragments": 1745, "total_fragments": 3231, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea antri", "strain": "strain=NN258", "accession": "GCA_013283785.1", "taxid": 2730852, "species_taxid": 2730852, "relation_to_type": "type", "validated": true, "ani": 81.9097, "matched_fragments": 1747, "total_fragments": 3231, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea guangzhouensis", "strain": "strain=CGMCC 4.7101", "accession": "GCA_019396345.1", "taxid": 1291555, "species_taxid": 1291555, "relation_to_type": "type", "validated": true, "ani": 81.8644, "matched_fragments": 1823, "total_fragments": 3231, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea montanisoli", "strain": "strain=SMC 257", "accession": "GCA_013363975.1", "taxid": 2741721, "species_taxid": 2741721, "relation_to_type": "type", "validated": true, "ani": 81.8461, "matched_fragments": 1755, "total_fragments": 3231, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea pusilla", "strain": "strain=DSM 43357", "accession": "GCA_900109355.1", "taxid": 46177, "species_taxid": 46177, "relation_to_type": "type", "validated": true, "ani": 81.7959, "matched_fragments": 1640, "total_fragments": 3231, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea ceibae", "strain": "strain=KCTC 39826", "accession": "GCA_019396325.1", "taxid": 1935170, "species_taxid": 1935170, "relation_to_type": "type", "validated": true, "ani": 81.6613, "matched_fragments": 1728, "total_fragments": 3231, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea rubra", "strain": "strain=DSM 43768", "accession": "GCA_014207985.1", "taxid": 46180, "species_taxid": 46180, "relation_to_type": "type", "validated": true, "ani": 81.6128, "matched_fragments": 1895, "total_fragments": 3231, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea phyllanthi", "strain": "strain=WYY166", "accession": "GCA_009497075.1", "taxid": 2219224, "species_taxid": 2219224, "relation_to_type": "type", "validated": true, "ani": 81.603, "matched_fragments": 1685, "total_fragments": 3231, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea phyllanthi", "strain": "strain=PA1-10", "accession": "GCA_006334985.2", "taxid": 2219224, "species_taxid": 2219224, "relation_to_type": "type", "validated": true, "ani": 81.5881, "matched_fragments": 1681, "total_fragments": 3231, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea diastatica", "strain": "strain=KC712", "accession": "GCA_004349015.1", "taxid": 1848329, "species_taxid": 1848329, "relation_to_type": "type", "validated": true, "ani": 81.5549, "matched_fragments": 1583, "total_fragments": 3231, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea harbinensis", "strain": "strain=CGMCC 4.7106", "accession": "GCA_019396385.1", "taxid": 1286938, "species_taxid": 1286938, "relation_to_type": "type", "validated": true, "ani": 81.5317, "matched_fragments": 1589, "total_fragments": 3231, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea wenchangensis", "strain": "strain=CGMCC 4.5598", "accession": "GCA_900111685.1", "taxid": 568860, "species_taxid": 568860, "relation_to_type": "type", "validated": true, "ani": 81.4581, "matched_fragments": 1690, "total_fragments": 3231, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea jiangxiensis", "strain": "strain=CGMCC 4.6533", "accession": "GCA_900099965.1", "taxid": 633440, "species_taxid": 633440, "relation_to_type": "type", "validated": true, "ani": 81.2888, "matched_fragments": 1726, 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