{ "type": "genome", "identifier": "GCF_014873935.1", "organism": "Actinomadura algeriensis", "title": "Actinomadura algeriensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014873935.1", "bioproject": "PRJNA224116", "biosample": "SAMN15740230", "wgs_master": "JADBDZ000000000.1", "refseq_category": "reference genome", "taxid": "1679523", "species_taxid": "1679523", "organism_name": "Actinomadura algeriensis", "infraspecific_name": "strain=DSM 46744", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/10/09", "asm_name": "ASM1487393v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_014873935.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/873/935/GCF_014873935.1_ASM1487393v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8612339", "genome_size_ungapped": "8612339", "gc_percent": "73.000000", "replicon_count": "0", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014873935.1-RS_2024_11_18", "annotation_date": "2024-11-18", "total_gene_count": "7915", "protein_coding_gene_count": "7745", "non_coding_gene_count": "90", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-10-09", "dateModified": "2020-10-09", "datePublished": "2020-10-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Actinomadura algeriensis" ], "sample_taxid": [ "1679523" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "2.268 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8612339", "Number of Sequences": "1", "Longest Sequences (bp)": "8612339", "N50 (bp)": "8612339", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "72.9", "Number of CDSs": "7918", "Average Protein Length": "328.7", "Coding Ratio (%)": "90.7", "Number of rRNAs": "15", "Number of tRNAs": "96", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Actinomadura algeriensis", "strain": "strain=DSM 46744", "accession": "GCA_014873935.1", "taxid": 1679523, "species_taxid": 1679523, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2869, "total_fragments": 2870, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Actinomadura cremea", "strain": "strain=JCM 3308", "accession": "GCA_014648495.1", "taxid": 1991, "species_taxid": 1991, "relation_to_type": "type", "validated": true, "ani": 91.16, "matched_fragments": 2274, "total_fragments": 2870, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura rifamycini", "strain": "strain=DSM 43936", "accession": "GCA_000425065.1", "taxid": 31962, "species_taxid": 31962, "relation_to_type": "type", "validated": true, "ani": 90.5313, "matched_fragments": 2171, "total_fragments": 2870, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura bangladeshensis", "strain": "strain=DSM 45347", "accession": "GCA_004348335.1", "taxid": 453573, "species_taxid": 453573, "relation_to_type": "type", "validated": true, "ani": 83.8781, "matched_fragments": 1560, "total_fragments": 2870, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura latina", "strain": "strain=ATCC BAA-277", "accession": "GCA_012396395.1", "taxid": 163603, "species_taxid": 163603, "relation_to_type": "type", "validated": true, "ani": 83.6457, "matched_fragments": 1618, "total_fragments": 2870, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura physcomitrii", "strain": "strain=LD22", "accession": "GCA_008923205.2", "taxid": 2650748, "species_taxid": 2650748, "relation_to_type": "type", "validated": true, "ani": 83.6135, "matched_fragments": 1739, "total_fragments": 2870, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura montaniterrae", "strain": "strain=CYP1-1B", "accession": "GCA_008923365.1", "taxid": 1803903, "species_taxid": 1803903, "relation_to_type": "type", "validated": true, "ani": 83.5841, "matched_fragments": 1736, "total_fragments": 2870, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura formosensis", "strain": "strain=NBRC 14204", "accession": "GCA_001552155.1", "taxid": 60706, "species_taxid": 60706, "relation_to_type": "type", "validated": true, "ani": 83.5463, "matched_fragments": 1383, "total_fragments": 2870, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura nitritigenes", "strain": "strain=L46", "accession": "GCA_017573545.1", "taxid": 134602, "species_taxid": 134602, "relation_to_type": "type", "validated": true, "ani": 83.4132, "matched_fragments": 1840, "total_fragments": 2870, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura darangshiensis", "strain": "strain=DSM 45941", "accession": "GCA_004349235.1", "taxid": 705336, "species_taxid": 705336, "relation_to_type": "type", "validated": true, "ani": 83.4001, "matched_fragments": 1669, "total_fragments": 2870, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura violacea", "strain": "strain=LCR2-06", "accession": "GCA_017573465.1", "taxid": 2819934, "species_taxid": 2819934, "relation_to_type": "type", "validated": true, "ani": 83.3956, "matched_fragments": 1879, "total_fragments": 2870, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura madurae", "strain": "strain=DSM 43067", "accession": "GCA_900115095.1", "taxid": 1993, "species_taxid": 1993, "relation_to_type": "type", "validated": true, "ani": 83.2569, "matched_fragments": 1769, "total_fragments": 2870, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura citrea", "strain": "strain=DSM 43461", "accession": "GCA_013409045.1", "taxid": 46158, "species_taxid": 46158, "relation_to_type": "type", "validated": true, "ani": 83.2532, "matched_fragments": 1764, "total_fragments": 2870, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura citrea", "strain": "strain=JCM 3295", "accession": "GCA_014648455.1", "taxid": 46158, 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"validated": true, "ani": 81.0623, "matched_fragments": 1518, "total_fragments": 2870, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura rupiterrae", "strain": "strain=DSM 45251", "accession": "GCA_024172125.1", "taxid": 559627, "species_taxid": 559627, "relation_to_type": "type", "validated": true, "ani": 80.7198, "matched_fragments": 1481, "total_fragments": 2870, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014873935.1", "gtdb_species": "s__Spirillospora algeriensis", "ani": 100.0, "matched_fragments": 2869, "total_fragments": 2870, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Spirillospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", 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