{ "type": "genome", "identifier": "GCF_014874035.1", "organism": "Nocardiopsis terrae", "title": "Nocardiopsis terrae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014874035.1", "bioproject": "PRJNA224116", "biosample": "SAMN15740366", "wgs_master": "JADBDY000000000.1", "refseq_category": "na", "taxid": "372655", "species_taxid": "372655", "organism_name": "Nocardiopsis terrae", "infraspecific_name": "strain=DSM 45157", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/10/09", "asm_name": "ASM1487403v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_014874035.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/874/035/GCF_014874035.1_ASM1487403v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6036863", "genome_size_ungapped": "6036863", "gc_percent": "71.000000", "replicon_count": "0", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014874035.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "5232", "protein_coding_gene_count": "5107", "non_coding_gene_count": "74", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-10-09", "dateModified": "2020-10-09", "datePublished": "2020-10-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Nocardiopsis terrae" ], "sample_taxid": [ "372655" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.625 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6036863", "Number of Sequences": "1", "Longest Sequences (bp)": "6036863", "N50 (bp)": "6036863", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "70.8", "Number of CDSs": "5299", "Average Protein Length": "328.9", "Coding Ratio (%)": "86.6", "Number of rRNAs": "15", "Number of tRNAs": "70", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nocardiopsis terrae", "strain": "strain=DSM 45157", "accession": "GCA_014874035.1", "taxid": 372655, "species_taxid": 372655, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2011, "total_fragments": 2012, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Nocardiopsis terrae", "strain": "strain=KCTC 19431", "accession": "GCA_014651695.1", "taxid": 372655, "species_taxid": 372655, "relation_to_type": "type", "validated": true, "ani": 99.9894, "matched_fragments": 1990, "total_fragments": 2012, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Nocardiopsis ganjiahuensis", "strain": "strain=DSM 45031", "accession": "GCA_000341085.1", "taxid": 239984, "species_taxid": 239984, "relation_to_type": "type", "validated": true, "ani": 88.5827, "matched_fragments": 1581, "total_fragments": 2012, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis exhalans", "strain": "strain=JCM11759T", "accession": "GCA_024134545.1", "taxid": 163604, "species_taxid": 163604, "relation_to_type": "type", "validated": true, "ani": 87.8623, "matched_fragments": 1568, "total_fragments": 2012, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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