{ "type": "genome", "identifier": "GCF_014875745.1", "organism": "Deinococcus wulumuqiensis R12", "title": "Deinococcus wulumuqiensis R12", "description": "na", "data type": "Genome sequencing and assembly", "organization": "BGI-Qingdao", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014875745.1", "bioproject": "PRJNA224116", "biosample": "SAMN16242094", "wgs_master": "JADAKM000000000.1", "refseq_category": "na", "taxid": "1288484", "species_taxid": "980427", "organism_name": "Deinococcus wulumuqiensis R12", "infraspecific_name": "strain=R12", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/10/10", "asm_name": "ASM1487574v1", "asm_submitter": "BGI-Qingdao", "gbrs_paired_asm": "GCA_014875745.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/875/745/GCF_014875745.1_ASM1487574v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3874296", "genome_size_ungapped": "3446184", "gc_percent": "66.000000", "replicon_count": "0", "scaffold_count": "62", "contig_count": "62", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014875745.1-RS_2024_11_18", "annotation_date": "2024-11-18", "total_gene_count": "3341", "protein_coding_gene_count": "3243", "non_coding_gene_count": "59", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-10-10", "dateModified": "2020-10-10", "datePublished": "2020-10-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Deinococcus wulumuqiensis R12" ], "sample_taxid": [ "1288484" ], "sample_host_organism": [ "not collected" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Malan" ], "sample_host_location_id": [], "data_size": "0.945 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 8.33, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3874296", "Number of Sequences": "62", "Longest Sequences (bp)": "656904", "N50 (bp)": "424308", "Gap Ratio (%)": "11.050059", "GCcontent (%)": "66.2", "Number of CDSs": "3235", "Average Protein Length": "304.0", "Coding Ratio (%)": "76.2", "Number of rRNAs": "6", "Number of tRNAs": "51", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Deinococcus wulumuqiensis", "strain": "strain=R12", "accession": "GCA_014875745.1", "taxid": 980427, "species_taxid": 980427, "relation_to_type": "type", "validated": true, "ani": 99.9572, "matched_fragments": 1115, "total_fragments": 1269, 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