{
    "type": "genome",
    "identifier": "GCF_014877095.1",
    "organism": "Staphylococcus schweitzeri",
    "title": "Staphylococcus schweitzeri",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Public Health Ontario",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_014877095.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN16304018",
        "wgs_master": "JADAMT000000000.1",
        "refseq_category": "na",
        "taxid": "1654388",
        "species_taxid": "1654388",
        "organism_name": "Staphylococcus schweitzeri",
        "infraspecific_name": "strain=DSM 28300",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/10/11",
        "asm_name": "ASM1487709v1",
        "asm_submitter": "Public Health Ontario",
        "gbrs_paired_asm": "GCA_014877095.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/877/095/GCF_014877095.1_ASM1487709v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2774540",
        "genome_size_ungapped": "2774540",
        "gc_percent": "32.500000",
        "replicon_count": "0",
        "scaffold_count": "117",
        "contig_count": "117",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_014877095.1-RS_2024_11_18",
        "annotation_date": "2024-11-18",
        "total_gene_count": "2750",
        "protein_coding_gene_count": "2587",
        "non_coding_gene_count": "72",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-10-11",
    "dateModified": "2020-10-11",
    "datePublished": "2020-10-11",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Staphylococcus schweitzeri"
        ],
        "sample_taxid": [
            "1654388"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [
            "Unknown"
        ],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Gabon: Moyen-Ogooue"
        ],
        "sample_host_location_id": [],
        "data_size": "0.774 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 4.17,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2774540",
        "Number of Sequences": "117",
        "Longest Sequences (bp)": "311968",
        "N50 (bp)": "125436",
        "Gap Ratio (%)": "0.000433",
        "GCcontent (%)": "32.3",
        "Number of CDSs": "2571",
        "Average Protein Length": "298.1",
        "Coding Ratio (%)": "82.9",
        "Number of rRNAs": "3",
        "Number of tRNAs": "60",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Staphylococcus schweitzeri",
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                "accession": "GCA_014877095.1",
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                "species_taxid": 1654388,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 893,
                "total_fragments": 894,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Staphylococcus schweitzeri",
                "strain": "strain=NCTC13712",
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                "species_taxid": 1654388,
                "relation_to_type": "type",
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                "total_fragments": 894,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Staphylococcus schweitzeri",
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                "accession": "GCA_002902405.1",
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                "relation_to_type": "type",
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                "ani": 99.9834,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Staphylococcus argenteus",
                "strain": "strain=DSM 28299",
                "accession": "GCA_014877305.1",
                "taxid": 985002,
                "species_taxid": 985002,
                "relation_to_type": "type",
                "validated": true,
                "ani": 92.9112,
                "matched_fragments": 818,
                "total_fragments": 894,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Staphylococcus argenteus",
                "strain": "strain=MSHR1132",
                "accession": "GCA_000236925.1",
                "taxid": 985002,
                "species_taxid": 985002,
                "relation_to_type": "type",
                "validated": true,
                "ani": 92.8895,
                "matched_fragments": 820,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Staphylococcus aureus",
                "strain": "strain=PartF-Saureus-RM8376",
                "accession": "GCA_022869625.1",
                "taxid": 1280,
                "species_taxid": 1280,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.2612,
                "matched_fragments": 801,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Staphylococcus aureus",
                "strain": "strain=NCTC 08532",
                "accession": "GCA_002902205.1",
                "taxid": 1280,
                "species_taxid": 1280,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.2429,
                "matched_fragments": 798,
                "total_fragments": 894,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Staphylococcus taiwanensis",
                "strain": "strain=NTUH-S172",
                "accession": "GCA_020544305.1",
                "taxid": 2750012,
                "species_taxid": 2750012,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.2312,
                "matched_fragments": 311,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Staphylococcus shinii",
                "strain": "strain=K22-5M",
                "accession": "GCA_017583065.1",
                "taxid": 2912228,
                "species_taxid": 2912228,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2618,
                "matched_fragments": 255,
                "total_fragments": 894,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 4.17,
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        },
        "gtdb_result": [
            {
                "accession": "GCF_002902405.1",
                "gtdb_species": "s__Staphylococcus schweitzeri",
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                "total_fragments": 894,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.10",
                "min_intra_species_ani": "98.12",
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                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 9,
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            },
            {
                "accession": "GCF_015025035.1",
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                "matched_fragments": 820,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.24",
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                "num_clustered_genomes": 11,
                "status": "-"
            },
            {
                "accession": "GCF_000236925.1",
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                "mean_intra_species_ani": "99.00",
                "min_intra_species_ani": "98.60",
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                "num_clustered_genomes": 171,
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            },
            {
                "accession": "GCF_001027105.1",
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            },
            {
                "accession": "GCF_002902085.1",
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                "accession": "GCF_017357005.1",
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            {
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            },
            {
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                "num_clustered_genomes": 4,
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        ]
    },
    "_bac2feature": {
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    "_genome_taxon": [
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    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}