# locus_id	locus_tag	location	classification	internal_stop	indel	ref_id	description	query_cov	ref_cov	identity
MGA_2	LOCUS_00020	sequence001:1949..2263(-)	frameshift,internal_stop_codon	2293..2295(-)	2295	WP_002485357.1	persulfide dioxygenase-sulfurtransferase CstB	100.0	23.5	89.4
MGA_3	LOCUS_00030	sequence001:2200..3204(-)	frameshift,internal_stop_codon	2293..2295(-)	2298	WP_002485357.1	persulfide dioxygenase-sulfurtransferase CstB	91.3	69.0	95.7
MGA_5	LOCUS_00050	sequence001:3457..3828(+)	partial			WP_003114208.1	HNH endonuclease	81.3	37.0	47.0
MGA_7	LOCUS_00070	sequence001:5070..5264(-)	partial			WP_126475239.1	IS1182 family transposase	100.0	11.7	93.8
MGA_8	LOCUS_00080	sequence001:5538..6647(-)	frameshift,internal_stop_codon	5537..5539(-)	6676	WP_012257687.1	type I restriction endonuclease subunit R	98.1	33.9	51.5
MGA_9	LOCUS_00090	sequence001:6635..7378(-)	frameshift,internal_stop_codon	7511..7513(-)	6676	WP_002858356.1	type I restriction endonuclease subunit R	96.0	23.3	50.2
MGA_10	LOCUS_00100	sequence001:7633..8259(-)	partial			WP_164926902.1	restriction endonuclease subunit S	97.6	44.5	26.3
MGA_18	LOCUS_00180	sequence001:15547..16815(+)	partial			WP_003899494.1	type III-A CRISPR-associated CARF protein Csm6	49.5	49.6	31.9
MGA_21	LOCUS_00200	sequence001:18739..20265(+)	partial			WP_211850673.1	RNA-directed DNA polymerase	31.3	27.2	30.2
MGA_43	LOCUS_00420	sequence001:40764..42116(-)	internal_stop_codon	42189..42191(-)		WP_000291840.1	oleate hydratase	100.0	76.1	95.6
MGA_44	LOCUS_00430	sequence001:42189..42539(-)	internal_stop_codon	42189..42191(-)		WP_000291840.1	oleate hydratase	100.0	19.6	94.8
MGA_87	LOCUS_00860	sequence001:87657..87851(+)	partial			WP_000469833.1	XRE family transcriptional regulator	100.0	16.4	96.9
MGA_99	LOCUS_00980	sequence001:100928..101485(+)	partial			WP_002294234.1	chorismate mutase	48.6	32.9	48.4
MGA_139	LOCUS_01380	sequence001:153458..154366(+)	partial			WP_001796914.1	ABC transporter permease	100.0	61.4	86.1
MGA_170	LOCUS_01690	sequence001:195705..196262(-)	partial			WP_005808295.1	TetR/AcrR family transcriptional regulator	33.5	30.4	51.6
MGA_233	LOCUS_02310	sequence002:2798..4570(+)	partial			WP_009994769.1	RNA-directed DNA polymerase	58.8	61.9	25.5
MGA_346	LOCUS_03390	sequence005:107567..107815(+)	frameshift		107513	WP_001791980.1	hypothetical protein	98.8	74.3	71.6
MGA_353	LOCUS_03460	sequence005:115387..116073(-)	partial			WP_003894962.1	MBL fold metallo-hydrolase	68.4	77.9	29.6
MGA_367	LOCUS_03600	sequence005:132687..132914(-)	partial			WP_000160701.1	AAA family ATPase	98.7	27.3	87.8
MGA_368	LOCUS_03610	sequence005:132922..133281(+)	partial			WP_126475239.1	IS1182 family transposase	92.4	20.2	96.4
MGA_378	LOCUS_03710	sequence005:141550..>142606(-)	partial			WP_000745891.1	MSCRAMM family adhesin clumping factor ClfB	22.5	9.0	77.2
MGA_383	LOCUS_03720	sequence010:190..420(-)	partial			WP_000800700.1	NCS2 family permease	100.0	17.1	97.4
MGA_450	LOCUS_04360	sequence013:73060..73275(+)	partial			WP_000093025.1	hypothetical protein	91.5	48.1	60.0
MGA_564	LOCUS_05500	sequence013:200722..202155(+)	partial			WP_000915238.1	lipoteichoic acid-specific glycosyltransferase YfhO	100.0	55.0	77.4
MGA_570	LOCUS_05560	sequence014:75..329(-)	internal_stop_codon	333..335(-),75..77(-)		WP_001186804.1	staphyloferrin B biosynthesis citrate synthase SbnG	100.0	32.6	75.0
MGA_581	LOCUS_05600	sequence019:3150..3329(+)	partial			WP_011222005.1	protein rep	94.9	16.9	42.9
MGA_629	LOCUS_06070	sequence021:37543..37719(-)	partial			WP_000048060.1	30S ribosomal protein S21	74.1	74.1	100.0
MGA_705	LOCUS_06830	sequence021:111963..112433(-)	partial			WP_000261115.1	A24 family peptidase	100.0	66.4	61.5
MGA_730	LOCUS_07080	sequence021:140842..141321(-)	frameshift,internal_stop_codon	141328..141330(-),140749..140751(-),141610..141612(-)	140865,140766	WP_126475239.1	IS1182 family transposase	97.5	28.8	93.6
MGA_731	LOCUS_07090	sequence021:141328..141519(-)	internal_stop_codon	141328..141330(-),141610..141612(-)		WP_126475239.1	IS1182 family transposase	100.0	11.6	96.8
MGA_732	LOCUS_07100	sequence021:141610..141831(-)	frameshift,internal_stop_codon	141328..141330(-),141610..141612(-)	141829	WP_126475239.1	IS1182 family transposase	97.3	13.0	88.7
MGA_733	LOCUS_07110	sequence021:141806..142045(-)	frameshift,internal_stop_codon	141610..141612(-)	141829	WP_126475239.1	IS1182 family transposase	94.9	13.8	92.0
MGA_742	LOCUS_07150	sequence026:4502..5035(-)	partial			WP_000849428.1	hypothetical protein	100.0	35.8	81.4
MGA_761	LOCUS_07340	sequence026:18888..19337(+)	frameshift		18805	WP_055164393.1	IS30 family transposase	87.9	42.7	39.3
MGA_762	LOCUS_07350	sequence026:19534..20493(-)	partial			WP_000849428.1	hypothetical protein	99.4	64.0	89.0
MGA_792	LOCUS_07650	sequence026:57069..57551(-)	partial			WP_126475239.1	IS1182 family transposase	86.9	26.2	90.2
MGA_873	LOCUS_08460	sequence026:151359..151811(-)	partial			WP_000755747.1	DUF1433 domain-containing protein	70.7	77.2	30.8
MGA_874	LOCUS_08470	sequence026:151849..153459(+)	partial			WP_009933212.1	hypothetical protein	30.2	46.2	29.6
MGA_879	LOCUS_08520	sequence026:158176..158418(-)	partial			WP_000586140.1	hypothetical protein	100.0	34.5	90.0
MGA_882	LOCUS_08550	sequence026:159992..160267(-)	internal_stop_codon	160334..160336(-)		WP_000782463.1	bi-component leukocidin LukED subunit D	85.7	23.9	87.2
MGA_884	LOCUS_08570	sequence026:162714..164060(+)	partial			WP_011860984.1	DUF4041 domain-containing protein	86.8	70.8	33.5
MGA_890	LOCUS_08630	sequence026:166954..167265(+)	frameshift		167242,166933	WP_000857191.1	site-specific integrase	93.2	27.8	30.2
MGA_891	LOCUS_08640	sequence026:167279..167614(+)	frameshift,internal_stop_codon	167612..167614(+)	167220	WP_096810449.1	site-specific integrase	99.1	31.0	33.6
MGA_904	LOCUS_08710	sequence030:418..1224(+)	frameshift		268	WP_126475239.1	IS1182 family transposase	100.0	49.2	96.6
MGA_920	LOCUS_08870	sequence030:12249..25634(-)	partial			WP_080388512.1	hyperosmolarity resistance protein Ebh	99.9	44.9	36.1
MGA_972	LOCUS_09390	sequence030:82362..82988(-)	frameshift		83008	WP_001557355.1	DUF1672 domain-containing protein	100.0	67.5	95.2
MGA_973	LOCUS_09400	sequence030:82997..83227(-)	frameshift		83008	WP_001557355.1	DUF1672 domain-containing protein	96.1	23.7	91.8
MGA_995	LOCUS_09620	sequence030:104619..105215(-)	partial			WP_001283968.1	winged helix-turn-helix transcriptional regulator	97.0	51.3	33.9
MGA_1030	LOCUS_09880	sequence039:481..1467(-)	partial			WP_000952923.1	beta-lactam sensor/signal transducer MecR1	96.3	54.0	100.0
MGA_1034	LOCUS_09920	sequence039:5604..5771(-)	partial			WP_020444595.1	hydroxymethylglutaryl-CoA synthase	100.0	42.6	100.0
MGA_1062	LOCUS_10200	sequence039:43276..43413(+)	partial			WP_000240855.1	50S ribosomal protein L34	60.0	60.0	100.0
MGA_1103	LOCUS_10610	sequence039:79990..80622(+)	frameshift		79978	WP_000592610.1	imidazole glycerol phosphate synthase subunit HisF	100.0	45.5	95.2
MGA_1117	LOCUS_10750	sequence039:93531..95624(-)	partial			WP_001260044.1	hypothetical protein	10.3	72.0	94.4
MGA_1119	LOCUS_10770	sequence039:96750..96959(-)	partial			WP_001260044.1	hypothetical protein	66.7	46.0	65.2
MGA_1126	LOCUS_10840	sequence039:103848..104372(-)	internal_stop_codon	103848..103850(-),104634..104636(-),104502..104504(-)		WP_002485492.1	hypothetical protein	67.8	20.3	38.9
MGA_1127	LOCUS_10850	sequence039:104634..105302(-)	internal_stop_codon	105372..105374(-),104634..104636(-),104502..104504(-)		WP_002485492.1	hypothetical protein	89.2	35.4	39.0
MGA_1129	LOCUS_10870	sequence039:105888..106622(-)	internal_stop_codon	105810..105812(-),105888..105890(-),106806..106808(-),105708..105710(-),105738..105740(-)		WP_002485492.1	hypothetical protein	68.0	33.5	39.4
MGA_1130	LOCUS_10880	sequence039:106806..107426(-)	internal_stop_codon	106806..106808(-),107460..107462(-)		WP_235601755.1	hypothetical protein	99.5	20.5	40.7
MGA_1132	LOCUS_10900	sequence039:107730..108074(-)	internal_stop_codon	107730..107732(-),107460..107462(-),108078..108080(-)		WP_002485492.1	hypothetical protein	91.2	19.6	41.9
MGA_1133	LOCUS_10910	sequence039:107971..108363(+)	partial			WP_000044547.1	serine-rich repeat glycoprotein adhesin SasA	80.0	4.3	50.0
MGA_1164	LOCUS_11200	sequence041:3117..4193(-)	frameshift		4227	WP_000531823.1	3-isopropylmalate dehydratase large subunit	100.0	78.5	95.3
MGA_1165	LOCUS_11210	sequence041:4195..4488(-)	frameshift		4227	WP_000531823.1	3-isopropylmalate dehydratase large subunit	94.8	20.2	94.6
MGA_1193	LOCUS_11490	sequence041:32514..33734(+)	partial			WP_000120296.1	SdrH family protein	55.9	54.7	80.2
MGA_1197	LOCUS_11530	sequence041:36708..36983(-)	frameshift,internal_stop_codon	36995..36997(-),36980..36982(-),37064..37066(-)	36952	WP_000179343.1	tyrosine-type recombinase/integrase	69.2	15.6	58.7
MGA_1219	LOCUS_11750	sequence041:52067..53443(+)	internal_stop_codon	53441..53443(+)		WP_000700554.1	AAA family ATPase	99.6	70.5	95.2
MGA_1220	LOCUS_11760	sequence041:53555..54016(+)	internal_stop_codon	53441..53443(+)		WP_000700557.1	AAA family ATPase	100.0	23.6	93.5
MGA_1230	LOCUS_11860	sequence041:58746..59093(+)	partial			WP_072467505.1	acetyltransferase	36.5	35.5	69.0
MGA_1234	LOCUS_11900	sequence041:60715..60903(+)	partial			WP_000195784.1	DUF1381 domain-containing protein	79.0	72.1	91.8
MGA_1251	LOCUS_12070	sequence041:70091..70231(+)	partial			WP_072050172.1	Ig-like domain-containing protein	100.0	62.2	97.8
MGA_1268	LOCUS_12240	sequence041:87363..88457(+)	internal_stop_codon	88455..88457(+)		WP_001557458.1	extracellular adherence protein Eap/Map	98.9	76.3	57.6
MGA_1269	LOCUS_12250	sequence041:88578..88778(+)	partial			WP_000671712.1	MAP domain-containing protein	100.0	68.8	59.1
MGA_1313	LOCUS_12690	sequence041:133295..133456(+)	frameshift,internal_stop_codon	133455..133457(+),133224..133226(+)	133214	WP_084146450.1	carboxylesterase/lipase family protein	100.0	10.7	41.9
MGA_1559	LOCUS_14930	sequence064:90336..90638(-)	partial			WP_158908668.1	HsdR family type I site-specific deoxyribonuclease	92.0	15.0	48.9
MGA_1564	LOCUS_14980	sequence064:92629..93153(-)	frameshift		93167	WP_016117865.1	TnsD family Tn7-like transposition protein	90.8	25.9	29.9
MGA_1565	LOCUS_14990	sequence064:93150..94094(-)	frameshift		93170	WP_016117865.1	TnsD family Tn7-like transposition protein	92.4	46.3	28.9
MGA_1568	LOCUS_15020	sequence064:94997..96067(-)	frameshift,internal_stop_codon	96135..96137(-)	96062	WP_016117864.1	ATP-binding protein	98.3	62.3	31.7
MGA_1570	LOCUS_15040	sequence064:96595..97239(+)	partial			WP_001059647.1	ISL3 family transposase	99.5	48.4	45.1
MGA_1582	LOCUS_15150	sequence065:1..875(+)	partial			WP_000610259.1	MSCRAMM family adhesin SdrE	23.1	5.9	85.1
MGA_1590	LOCUS_15170	sequence070:3576..>4529(-)	partial			WP_001060462.1	MSCRAMM family adhesin SdrC	31.9	10.6	99.0
MGA_1724	LOCUS_16390	sequence090:375..1238(+)	frameshift,internal_stop_codon	1302..1304(+)	1097	WP_126475239.1	IS1182 family transposase	91.3	49.4	86.6
MGA_1725	LOCUS_16400	sequence090:1343..1687(+)	frameshift,internal_stop_codon	1302..1304(+)	1100	WP_126475239.1	IS1182 family transposase	99.1	20.7	97.3
MGA_1750	LOCUS_16650	sequence090:28153..28356(+)	partial			WP_001548522.1	TM2 domain-containing protein	100.0	72.8	92.5
MGA_1843	LOCUS_17580	sequence090:127313..128224(+)	frameshift		127311	WP_001548380.1	heme A synthase	99.7	84.8	92.7
MGA_1882	LOCUS_17970	sequence090:169443..169979(+)	partial			WP_000273253.1	energy-coupling factor transporter transmembrane protein EcfT	100.0	66.4	91.0
MGA_1917	LOCUS_18320	sequence090:209839..210156(-)	frameshift		210262	WP_000620949.1	GNAT family N-acetyltransferase	100.0	57.4	84.8
MGA_1918	LOCUS_18330	sequence090:210251..210391(-)	frameshift		210262	WP_000620949.1	GNAT family N-acetyltransferase	93.5	23.5	76.7
MGA_1919	LOCUS_18340	sequence090:210556..210768(+)	partial			WP_001788574.1	NINE protein	100.0	72.9	82.9
MGA_1942	LOCUS_18570	sequence090:235371..236153(+)	partial			WP_001795545.1	MFS transporter	100.0	64.7	94.6
MGA_2069	LOCUS_19840	sequence090:363902..366826(-)	partial			WP_001056195.1	MSCRAMM family adhesin clumping factor ClfA	58.3	56.5	70.4
MGA_2071	LOCUS_19860	sequence090:367863..368687(-)	partial			WP_011087810.1	N-acyl homoserine lactonase family protein	72.6	65.9	25.1
MGA_2076	LOCUS_19910	sequence090:372967..373116(-)	frameshift		373184	WP_000159787.1	transposase	83.7	45.6	75.6
MGA_2133	LOCUS_20480	sequence090:439234..439488(-)	partial			WP_001617169.1	hypothetical protein	40.5	73.5	77.8
MGA_2168	LOCUS_20830	sequence090:475878..476114(+)	internal_stop_codon	475860..475862(+),475809..475811(+)		WP_001801730.1	hypothetical protein	100.0	67.8	76.9
MGA_2229	LOCUS_21440	sequence090:539235..540227(+)	partial			WP_024666576.1	YqcI/YcgG family protein	54.8	70.0	23.9
MGA_2243	LOCUS_21580	sequence090:551720..552133(+)	internal_stop_codon	552131..552133(+)		WP_001557159.1	DMT family transporter	100.0	44.3	81.8
MGA_2244	LOCUS_21590	sequence090:552152..552649(+)	internal_stop_codon	552131..552133(+)		WP_001557159.1	DMT family transporter	87.9	46.9	79.3
MGA_2267	LOCUS_21820	sequence090:575653..575994(-)	partial			WP_000798967.1	DUF1450 domain-containing protein	69.0	69.0	100.0
MGA_2282	LOCUS_21950	sequence092:213..353(+)	internal_stop_codon	351..353(+),84..86(+)		WP_001249275.1	endonuclease MutS2	100.0	5.9	60.9
MGA_2284	LOCUS_21960	sequence093:151..318(+)	internal_stop_codon	82..84(+),316..318(+)		WP_000081231.1	beta-ketoacyl-ACP synthase II	100.0	13.3	78.2
MGA_2305	LOCUS_22170	sequence094:21174..21377(+)	frameshift,internal_stop_codon	21390..21392(+)	21371	WP_001293076.1	terminase small subunit	85.1	30.2	87.7
MGA_2370	LOCUS_22790	sequence098:1..586(+)	partial			WP_011082576.1	accumulation-associated protein Aap	67.0	8.8	58.5
MGA_2372	LOCUS_22810	sequence098:2171..2341(+)	partial			WP_001795286.1	hypothetical protein	100.0	72.7	83.9
MGA_2512	LOCUS_24210	sequence098:154281..154751(-)	frameshift,internal_stop_codon	154296..154298(-)	154310	WP_126475239.1	IS1182 family transposase	99.4	28.4	92.9
MGA_2513	LOCUS_24220	sequence098:154705..154995(-)	internal_stop_codon	155107..155109(-)		WP_126475239.1	IS1182 family transposase	88.5	15.6	92.9
MGA_2649	LOCUS_25580	sequence098:274593..275066(+)	partial			WP_000470932.1	AAA family ATPase	87.3	20.5	40.3
MGA_2650	LOCUS_25590	sequence098:275111..276430(+)	partial			WP_000181735.1	ATP-dependent helicase	99.3	72.2	35.1
