{
    "type": "genome",
    "identifier": "GCF_014903745.1",
    "organism": "Mangrovicoccus algicola",
    "title": "Mangrovicoccus algicola",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Chinese Academy of Tropical Agricultural Sciences",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_014903745.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN16085980",
        "wgs_master": "JACVXA000000000.1",
        "refseq_category": "reference genome",
        "taxid": "2771008",
        "species_taxid": "2771008",
        "organism_name": "Mangrovicoccus algicola",
        "infraspecific_name": "strain=HB182678",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/10/20",
        "asm_name": "ASM1490374v1",
        "asm_submitter": "Chinese Academy of Tropical Agricultural Sciences",
        "gbrs_paired_asm": "GCA_014903745.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/903/745/GCF_014903745.1_ASM1490374v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4397334",
        "genome_size_ungapped": "4397334",
        "gc_percent": "69.000000",
        "replicon_count": "0",
        "scaffold_count": "146",
        "contig_count": "146",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_014903745.1-RS_2024_12_11",
        "annotation_date": "2024-12-11",
        "total_gene_count": "4244",
        "protein_coding_gene_count": "4107",
        "non_coding_gene_count": "56",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-10-20",
    "dateModified": "2020-10-20",
    "datePublished": "2020-10-20",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Mangrovicoccus algicola"
        ],
        "sample_taxid": [
            "2771008"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China: Hainan"
        ],
        "sample_host_location_id": [],
        "data_size": "1.194 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4397334",
        "Number of Sequences": "146",
        "Longest Sequences (bp)": "164709",
        "N50 (bp)": "59770",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "68.8",
        "Number of CDSs": "4092",
        "Average Protein Length": "315.2",
        "Coding Ratio (%)": "88.0",
        "Number of rRNAs": "3",
        "Number of tRNAs": "60",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Mangrovicoccus algicola",
                "strain": "strain=HB182678",
                "accession": "GCA_014903745.1",
                "taxid": 2771008,
                "species_taxid": 2771008,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1384,
                "total_fragments": 1389,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Mangrovicoccus ximenensis",
                "strain": "strain=T1lg56",
                "accession": "GCA_003056725.1",
                "taxid": 1911570,
                "species_taxid": 1911570,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.2773,
                "matched_fragments": 925,
                "total_fragments": 1389,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhodovulum visakhapatnamense",
                "strain": "strain=JA181",
                "accession": "GCA_004365965.1",
                "taxid": 364297,
                "species_taxid": 364297,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.0586,
                "matched_fragments": 506,
                "total_fragments": 1389,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhodovulum sulfidophilum",
                "strain": "strain=DSM 1374",
                "accession": "GCA_000520135.2",
                "taxid": 35806,
                "species_taxid": 35806,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.9195,
                "matched_fragments": 518,
                "total_fragments": 1389,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhodovulum sulfidophilum",
                "strain": "strain=DSM 1374",
                "accession": "GCA_001633165.1",
                "taxid": 35806,
                "species_taxid": 35806,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8902,
                "matched_fragments": 529,
                "total_fragments": 1389,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Salipiger bermudensis",
                "strain": "strain=HTCC2601",
                "accession": "GCA_000153725.1",
                "taxid": 344736,
                "species_taxid": 344736,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8658,
                "matched_fragments": 550,
                "total_fragments": 1389,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhodovulum euryhalinum",
                "strain": "strain=DSM 4868",
                "accession": "GCA_004342445.1",
                "taxid": 35805,
                "species_taxid": 35805,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.76,
                "matched_fragments": 473,
                "total_fragments": 1389,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhodovulum tesquicola",
                "strain": "strain=A-36s",
                "accession": "GCA_024128855.1",
                "taxid": 540254,
                "species_taxid": 540254,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7147,
                "matched_fragments": 482,
                "total_fragments": 1389,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Phaeovulum vinaykumarii",
                "strain": "strain=DSM 18714",
                "accession": "GCA_900156695.1",
                "taxid": 407234,
                "species_taxid": 407234,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.603,
                "matched_fragments": 436,
                "total_fragments": 1389,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Phaeovulum vinaykumarii",
                "strain": "strain=JA123",
                "accession": "GCA_900217755.1",
                "taxid": 407234,
                "species_taxid": 407234,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.602,
                "matched_fragments": 434,
                "total_fragments": 1389,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhodovulum strictum",
                "strain": "strain=DSM 11289",
                "accession": "GCA_009649175.1",
                "taxid": 58314,
                "species_taxid": 58314,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5958,
                "matched_fragments": 471,
                "total_fragments": 1389,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Salipiger marinus",
                "strain": "strain=DSM 26424",
                "accession": "GCA_900100085.1",
                "taxid": 555512,
                "species_taxid": 555512,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5049,
                "matched_fragments": 573,
                "total_fragments": 1389,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brevirhabdus pacifica",
                "strain": "strain=DSM 27767",
                "accession": "GCA_002797755.1",
                "taxid": 1267768,
                "species_taxid": 1267768,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3986,
                "matched_fragments": 387,
                "total_fragments": 1389,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Antarcticimicrobium luteum",
                "strain": "strain=318-1",
                "accession": "GCA_004358185.1",
                "taxid": 2547397,
                "species_taxid": 2547397,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2999,
                "matched_fragments": 483,
                "total_fragments": 1389,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paracoccus mutanolyticus",
                "strain": "strain=RSP-02",
                "accession": "GCA_003285265.1",
                "taxid": 1499308,
                "species_taxid": 1499308,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1987,
                "matched_fragments": 399,
                "total_fragments": 1389,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halovulum dunhuangense",
                "strain": "strain=YYQ-30",
                "accession": "GCA_013093415.1",
                "taxid": 1505036,
                "species_taxid": 1505036,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1986,
                "matched_fragments": 397,
                "total_fragments": 1389,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halovulum marinum",
                "strain": "strain=2CG4",
                "accession": "GCA_009697225.1",
                "taxid": 2662447,
                "species_taxid": 2662447,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.164,
                "matched_fragments": 477,
                "total_fragments": 1389,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Salibaculum griseiflavum",
                "strain": "strain=WDS4C29",
                "accession": "GCA_003129565.1",
                "taxid": 1914409,
                "species_taxid": 1914409,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1618,
                "matched_fragments": 351,
                "total_fragments": 1389,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Jannaschia seohaensis",
                "strain": "strain=DSM 25227",
                "accession": "GCA_900116765.1",
                "taxid": 475081,
                "species_taxid": 475081,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9217,
                "matched_fragments": 405,
                "total_fragments": 1389,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pararhodobacter aggregans",
                "strain": "strain=DSM 18938",
                "accession": "GCA_003054005.1",
                "taxid": 404875,
                "species_taxid": 404875,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.842,
                "matched_fragments": 499,
                "total_fragments": 1389,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pararhodobacter aggregans",
                "strain": "strain=D1-19",
                "accession": "GCA_003075525.1",
                "taxid": 404875,
                "species_taxid": 404875,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8036,
                "matched_fragments": 505,
                "total_fragments": 1389,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Amaricoccus solimangrovi",
                "strain": "strain=HB172011",
                "accession": "GCA_006385685.1",
                "taxid": 2589815,
                "species_taxid": 2589815,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6168,
                "matched_fragments": 433,
                "total_fragments": 1389,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_014903745.1",
                "gtdb_species": "s__Mangrovicoccus sp014903745",
                "ani": 100.0,
                "matched_fragments": 1384,
                "total_fragments": 1389,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Mangrovicoccus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_005870025.1",
                "gtdb_species": "s__Mangrovicoccus sp005870025",
                "ani": 85.1533,
                "matched_fragments": 1084,
                "total_fragments": 1389,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Mangrovicoccus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_013184745.1",
                "gtdb_species": "s__Mangrovicoccus sp013184745",
                "ani": 85.1471,
                "matched_fragments": 1035,
                "total_fragments": 1389,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Mangrovicoccus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003056725.1",
                "gtdb_species": "s__Mangrovicoccus ximenensis",
                "ani": 84.3089,
                "matched_fragments": 921,
                "total_fragments": 1389,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Mangrovicoccus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004365965.1",
                "gtdb_species": "s__Rhodovulum visakhapatnamense",
                "ani": 79.0815,
                "matched_fragments": 503,
                "total_fragments": 1389,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Rhodovulum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.55",
                "min_intra_species_ani": "98.44",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_003053725.1",
                "gtdb_species": "s__Rhodovulum kholense",
                "ani": 79.019,
                "matched_fragments": 517,
                "total_fragments": 1389,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Rhodovulum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.27",
                "min_intra_species_ani": "98.27",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_002073975.1",
                "gtdb_species": "s__Rhodovulum sp002073975",
                "ani": 78.9414,
                "matched_fragments": 498,
                "total_fragments": 1389,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Rhodovulum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900142185.1",
                "gtdb_species": "s__Lutimaribacter pacificus",
                "ani": 78.7521,
                "matched_fragments": 475,
                "total_fragments": 1389,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Lutimaribacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_009649175.1",
                "gtdb_species": "s__Rhodovulum strictum",
                "ani": 78.5707,
                "matched_fragments": 474,
                "total_fragments": 1389,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Rhodovulum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001447385.1",
                "gtdb_species": "s__Paracoccus sp001447385",
                "ani": 78.5355,
                "matched_fragments": 486,
                "total_fragments": 1389,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Paracoccus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000763885.1",
                "gtdb_species": "s__Paracoccus versutus",
                "ani": 78.5311,
                "matched_fragments": 497,
                "total_fragments": 1389,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Paracoccus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.67",
                "min_intra_species_ani": "98.17",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.76",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCF_000153305.1",
                "gtdb_species": "s__Oceanicola granulosus",
                "ani": 77.9432,
                "matched_fragments": 469,
                "total_fragments": 1389,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Oceanicola",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003075525.1",
                "gtdb_species": "s__Pararhodobacter aggregans",
                "ani": 77.7981,
                "matched_fragments": 506,
                "total_fragments": 1389,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Pararhodobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Mangrovicoccus",
        "algicola"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}