{ "type": "genome", "identifier": "GCF_014904065.1", "organism": "Gulosibacter sediminis", "title": "Gulosibacter sediminis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Xizang minzu University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014904065.1", "bioproject": "PRJNA224116", "biosample": "SAMN16175951", "wgs_master": "JACXJG000000000.1", "refseq_category": "na", "taxid": "1729695", "species_taxid": "1729695", "organism_name": "Gulosibacter sediminis", "infraspecific_name": "strain=YIM M12148", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/10/20", "asm_name": "ASM1490406v1", "asm_submitter": "Xizang minzu University", "gbrs_paired_asm": "GCA_014904065.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/904/065/GCF_014904065.1_ASM1490406v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2679799", "genome_size_ungapped": "2659312", "gc_percent": "67.000000", "replicon_count": "0", "scaffold_count": "64", "contig_count": "64", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-01-30", "total_gene_count": "2639", "protein_coding_gene_count": "2308", "non_coding_gene_count": "46", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-10-20", "dateModified": "2020-10-20", "datePublished": "2020-10-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Gulosibacter sediminis" ], "sample_taxid": [ "1729695" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Indian Ocean" ], "sample_host_location_id": [], "data_size": "0.732 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 91.67, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2679799", "Number of Sequences": "64", "Longest Sequences (bp)": "297893", "N50 (bp)": "143262", "Gap Ratio (%)": "0.803493", "GCcontent (%)": "67.2", "Number of CDSs": "2682", "Average Protein Length": "292.3", "Coding Ratio (%)": "87.8", "Number of rRNAs": "6", "Number of tRNAs": "40", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Gulosibacter faecalis", "strain": "strain=B187", "accession": "GCA_000381765.1", "taxid": 272240, "species_taxid": 272240, "relation_to_type": "type", "validated": true, "ani": 84.31, "matched_fragments": 633, "total_fragments": 865, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gulosibacter molinativorax", "strain": "strain=DSM 13485", "accession": "GCA_000425685.1", "taxid": 256821, "species_taxid": 256821, "relation_to_type": "type", "validated": true, "ani": 79.5901, "matched_fragments": 380, "total_fragments": 865, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gulosibacter molinativorax", "strain": "strain=ON4", "accession": "GCA_003010915.2", "taxid": 256821, "species_taxid": 256821, "relation_to_type": "type", "validated": true, "ani": 79.5701, "matched_fragments": 388, "total_fragments": 865, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gulosibacter macacae", "strain": "strain=YIM 102482-1", "accession": "GCA_003865375.1", "taxid": 2488791, "species_taxid": 2488791, "relation_to_type": "type", "validated": true, "ani": 79.465, "matched_fragments": 350, "total_fragments": 865, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gulosibacter bifidus", "strain": "strain=NBRC 103089", "accession": "GCA_001570925.1", "taxid": 272239, "species_taxid": 272239, "relation_to_type": "type", "validated": true, "ani": 78.4358, "matched_fragments": 246, "total_fragments": 865, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoclavibacter chungangensis", "strain": "strain=DSM 23821", "accession": "GCA_013410545.1", "taxid": 587635, "species_taxid": 587635, "relation_to_type": "type", "validated": true, "ani": 78.3552, "matched_fragments": 348, "total_fragments": 865, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gulosibacter chungangensis", "strain": "strain=KCTC 13959", "accession": "GCA_008831155.1", "taxid": 979746, "species_taxid": 979746, "relation_to_type": "type", "validated": true, "ani": 78.3416, "matched_fragments": 246, "total_fragments": 865, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoclavibacter chungangensis", "strain": "strain=DSM 23821", "accession": "GCA_008831135.1", "taxid": 587635, "species_taxid": 587635, "relation_to_type": "type", "validated": true, "ani": 78.3152, "matched_fragments": 345, "total_fragments": 865, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gulosibacter hominis", "strain": "strain=401352-2018", "accession": "GCA_904842695.1", "taxid": 2770504, "species_taxid": 2770504, "relation_to_type": "type", "validated": true, "ani": 78.0977, "matched_fragments": 204, "total_fragments": 865, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces marinus", "strain": "strain=DSM 26151", "accession": "GCA_021442325.1", "taxid": 1389020, "species_taxid": 1389020, "relation_to_type": "type", "validated": true, "ani": 77.7387, "matched_fragments": 257, "total_fragments": 865, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces aurantiacus", "strain": "strain=DSM 14598", "accession": "GCA_016907355.1", "taxid": 165814, "species_taxid": 165814, "relation_to_type": "type", "validated": true, "ani": 77.6982, "matched_fragments": 316, "total_fragments": 865, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium sorbitolivorans", "strain": "strain=CGMCC 1.15228", "accession": "GCA_003327285.1", "taxid": 1867410, "species_taxid": 1867410, "relation_to_type": "type", "validated": true, "ani": 77.6194, "matched_fragments": 286, "total_fragments": 865, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium sorbitolivorans", "strain": "strain=CGMCC 1.15228", "accession": "GCA_014641475.1", "taxid": 1867410, "species_taxid": 1867410, "relation_to_type": "type", "validated": true, "ani": 77.5455, "matched_fragments": 285, "total_fragments": 865, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amnibacterium setariae", "strain": "strain=DD4a", "accession": "GCA_003581425.1", "taxid": 2306585, "species_taxid": 2306585, "relation_to_type": "type", "validated": true, "ani": 77.2548, "matched_fragments": 223, "total_fragments": 865, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium atlanticum", "strain": "strain=WY121", "accession": "GCA_015277815.1", "taxid": 2782168, "species_taxid": 2782168, "relation_to_type": "type", "validated": true, "ani": 77.1284, "matched_fragments": 238, "total_fragments": 865, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas palmilytica", "strain": "strain=EW123", "accession": "GCA_021590045.1", "taxid": 2608402, "species_taxid": 2608402, "relation_to_type": "type", "validated": true, "ani": 76.4445, "matched_fragments": 221, "total_fragments": 865, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinotalea solisilvae", "strain": "strain=KACC 19191", "accession": "GCA_016464425.1", "taxid": 2072922, "species_taxid": 2072922, "relation_to_type": "type", "validated": true, "ani": 76.302, "matched_fragments": 228, "total_fragments": 865, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinotalea subterranea", "strain": "strain=HO-Ch2", "accession": "GCA_008364845.1", "taxid": 2607497, "species_taxid": 2607497, "relation_to_type": "type", "validated": true, "ani": 76.2813, "matched_fragments": 184, "total_fragments": 865, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 91.67, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900626105.1", "gtdb_species": "s__Gulosibacter sp900626105", "ani": 98.804, "matched_fragments": 799, "total_fragments": 865, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Gulosibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.80", "min_intra_species_ani": "98.80", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 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"filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Gulosibacter", "sediminis" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }