{ "type": "genome", "identifier": "GCF_014904735.1", "organism": "Microbulbifer hainanensis", "title": "Microbulbifer hainanensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Ningbo University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014904735.1", "bioproject": "PRJNA224116", "biosample": "SAMN16278380", "wgs_master": "JACZCR000000000.1", "refseq_category": "reference genome", "taxid": "2735675", "species_taxid": "2735675", "organism_name": "Microbulbifer hainanensis", "infraspecific_name": "strain=NBU-8HK146", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/10/20", "asm_name": "ASM1490473v1", "asm_submitter": "Ningbo University", "gbrs_paired_asm": "GCA_014904735.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/904/735/GCF_014904735.1_ASM1490473v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4723826", "genome_size_ungapped": "4723826", "gc_percent": "59.000000", "replicon_count": "0", "scaffold_count": "111", "contig_count": "111", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014904735.1-RS_2024_11_19", "annotation_date": "2024-11-19", "total_gene_count": "4133", "protein_coding_gene_count": "4068", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-10-20", "dateModified": "2020-10-20", "datePublished": "2020-10-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Microbulbifer hainanensis" ], "sample_taxid": [ "2735675" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Ningbo City" ], "sample_host_location_id": [], "data_size": "1.342 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4723826", "Number of Sequences": "111", "Longest Sequences (bp)": "317742", "N50 (bp)": "142852", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "58.9", "Number of CDSs": "4060", "Average Protein Length": "334.2", "Coding Ratio (%)": "86.2", "Number of rRNAs": "0", "Number of tRNAs": "47", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Microbulbifer hainanensis", "strain": "strain=NBU-8HK146", "accession": "GCA_014904735.1", "taxid": 2735675, "species_taxid": 2735675, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1533, "total_fragments": 1536, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Microbulbifer marinus", "strain": "strain=CGMCC 1.10657", "accession": "GCA_900107725.1", "taxid": 658218, "species_taxid": 658218, "relation_to_type": "type", "validated": true, "ani": 81.699, "matched_fragments": 768, "total_fragments": 1536, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbulbifer taiwanensis", "strain": "strain=LMG 26125", "accession": "GCA_014904815.1", "taxid": 986746, "species_taxid": 986746, "relation_to_type": "type", "validated": true, "ani": 81.3953, "matched_fragments": 790, "total_fragments": 1536, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbulbifer donghaiensis", "strain": "strain=CGMCC 1.7063", "accession": "GCA_900129095.1", "taxid": 494016, "species_taxid": 494016, "relation_to_type": "type", "validated": true, "ani": 81.3241, "matched_fragments": 816, "total_fragments": 1536, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbulbifer rhizosphaerae", "strain": "strain=CECT 8799", "accession": "GCA_014191725.1", "taxid": 1562603, "species_taxid": 1562603, "relation_to_type": "type", "validated": true, "ani": 80.3357, "matched_fragments": 729, "total_fragments": 1536, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbulbifer yueqingensis", "strain": "strain=CGMCC 1.10658", "accession": "GCA_900100355.1", "taxid": 658219, "species_taxid": 658219, "relation_to_type": "type", "validated": true, "ani": 80.2318, "matched_fragments": 611, "total_fragments": 1536, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbulbifer aggregans", "strain": "strain=CCB-MM1", "accession": "GCA_001750105.1", "taxid": 1769779, "species_taxid": 1769779, "relation_to_type": "type", "validated": true, "ani": 80.017, "matched_fragments": 563, "total_fragments": 1536, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbulbifer flavimaris", "strain": "strain=WRN-8", "accession": "GCA_001641755.2", "taxid": 1781068, "species_taxid": 1781068, "relation_to_type": "type", "validated": true, "ani": 79.9327, "matched_fragments": 592, "total_fragments": 1536, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbulbifer elongatus", "strain": "strain=DSM 6810", "accession": "GCA_022554105.1", "taxid": 86173, "species_taxid": 86173, "relation_to_type": "type", "validated": true, "ani": 79.2301, "matched_fragments": 474, "total_fragments": 1536, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbulbifer elongatus", "strain": "strain=DSM 6810", "accession": "GCA_021165935.1", "taxid": 86173, "species_taxid": 86173, "relation_to_type": "type", "validated": true, "ani": 79.1668, "matched_fragments": 489, "total_fragments": 1536, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbulbifer celer", "strain": "strain=KCTC 12973", "accession": "GCA_020991125.1", "taxid": 435905, "species_taxid": 435905, "relation_to_type": "type", "validated": true, "ani": 79.0724, "matched_fragments": 534, "total_fragments": 1536, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbulbifer variabilis", "strain": "strain=ATCC 700307", "accession": "GCA_000380565.1", "taxid": 266805, "species_taxid": 266805, "relation_to_type": "type", "validated": true, "ani": 78.4236, "matched_fragments": 299, "total_fragments": 1536, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas hydrolytica", "strain": "strain=DSWY01", "accession": "GCA_021495345.2", "taxid": 2493633, "species_taxid": 2493633, "relation_to_type": "type", "validated": true, "ani": 77.3155, "matched_fragments": 192, "total_fragments": 1536, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas guguanensis", "strain": "strain=JCM 18416", "accession": "GCA_900104265.1", "taxid": 1198456, 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0.142, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Microbulbifer", "hainanensis" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }