{ "type": "genome", "identifier": "GCF_014905115.1", "organism": "Sulfurimonas sediminis", "title": "Sulfurimonas sediminis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Third institute of oceanography, State Oceanic Administration", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014905115.1", "bioproject": "PRJNA224116", "biosample": "SAMN12085616", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2590020", "species_taxid": "2590020", "organism_name": "Sulfurimonas sediminis", "infraspecific_name": "strain=S2-6", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/10/21", "asm_name": "ASM1490511v1", "asm_submitter": "Third institute of oceanography, State Oceanic Administration", "gbrs_paired_asm": "GCA_014905115.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/905/115/GCF_014905115.1_ASM1490511v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2320257", "genome_size_ungapped": "2320257", "gc_percent": "37.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014905115.1-RS_2024_05_27", "annotation_date": "2024-05-27", "total_gene_count": "2475", "protein_coding_gene_count": "2390", "non_coding_gene_count": "59", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-10-21", "dateModified": "2020-10-21", "datePublished": "2020-10-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Sulfurimonas sediminis" ], "sample_taxid": [ "2590020" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Indian Ocean" ], "sample_host_location_id": [], "data_size": "0.647 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2320257", "Number of Sequences": "1", "Longest Sequences (bp)": "2320257", "N50 (bp)": "2320257", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "37.3", "Number of CDSs": "2426", "Average Protein Length": "296.0", "Coding Ratio (%)": "92.8", "Number of rRNAs": "12", "Number of tRNAs": "45", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Sulfurimonas sediminis", "strain": "strain=S2-6", "accession": "GCA_014905115.1", "taxid": 2590020, "species_taxid": 2590020, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 773, "total_fragments": 773, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Sulfurimonas hydrogeniphila", "strain": "strain=NW10", "accession": "GCA_009068765.1", "taxid": 2509341, "species_taxid": 2509341, "relation_to_type": "type", "validated": true, "ani": 92.276, "matched_fragments": 645, "total_fragments": 773, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfurimonas autotrophica", "strain": "strain=DSM 16294", "accession": "GCA_000147355.1", "taxid": 202747, "species_taxid": 202747, "relation_to_type": "type", "validated": true, "ani": 81.9669, "matched_fragments": 497, "total_fragments": 773, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfurimonas paralvinellae", "strain": "strain=GO25", "accession": "GCA_014905135.1", "taxid": 317658, "species_taxid": 317658, "relation_to_type": "type", "validated": true, "ani": 78.9025, "matched_fragments": 261, "total_fragments": 773, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfurimonas indica", "strain": "strain=NW8N", "accession": "GCA_009192995.1", "taxid": 2508707, "species_taxid": 2508707, "relation_to_type": "type", "validated": true, "ani": 78.5002, "matched_fragments": 259, "total_fragments": 773, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfurimonas xiamenensis", "strain": "strain=1-1N", "accession": "GCA_009258045.1", "taxid": 2590021, "species_taxid": 2590021, "relation_to_type": "type", "validated": true, "ani": 78.1079, "matched_fragments": 125, "total_fragments": 773, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Candidatus Sulfurimonas baltica", "strain": "strain=GD2", "accession": "GCA_015265455.1", "taxid": 2740404, "species_taxid": 2740404, "relation_to_type": "type", "validated": true, "ani": 77.7845, "matched_fragments": 134, "total_fragments": 773, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Candidatus Sulfurimonas marisnigri", "strain": "strain=SoZ1", "accession": "GCA_015265475.1", "taxid": 2740405, "species_taxid": 2740405, "relation_to_type": "type", "validated": true, "ani": 77.6323, "matched_fragments": 137, "total_fragments": 773, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014905115.1", "gtdb_species": "s__Sulfurimonas sediminis", "ani": 100.0, "matched_fragments": 773, "total_fragments": 773, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Sulfurimonadaceae;g__Sulfurimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_009068765.1", "gtdb_species": "s__Sulfurimonas sp009068765", "ani": 92.2854, "matched_fragments": 646, "total_fragments": 773, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Sulfurimonadaceae;g__Sulfurimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000147355.1", "gtdb_species": "s__Sulfurimonas autotrophica", "ani": 81.9762, "matched_fragments": 496, "total_fragments": 773, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Sulfurimonadaceae;g__Sulfurimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_015662405.1", "gtdb_species": "s__Sulfurimonas autotrophica_A", "ani": 80.5631, "matched_fragments": 262, "total_fragments": 773, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Sulfurimonadaceae;g__Sulfurimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014905135.1", "gtdb_species": "s__Sulfurimonas paralvinellae", "ani": 78.8867, "matched_fragments": 262, "total_fragments": 773, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Sulfurimonadaceae;g__Sulfurimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013607665.1", "gtdb_species": "s__Sulfurimonas sp013607665", "ani": 78.7596, "matched_fragments": 208, "total_fragments": 773, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Sulfurimonadaceae;g__Sulfurimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009192995.1", "gtdb_species": "s__Sulfurimonas indica", "ani": 78.5011, "matched_fragments": 259, "total_fragments": 773, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Sulfurimonadaceae;g__Sulfurimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002733945.2", "gtdb_species": "s__Sulfurimonas sp002733945", "ani": 77.5368, "matched_fragments": 137, "total_fragments": 773, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Sulfurimonadaceae;g__Sulfurimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_015488615.1", "gtdb_species": "s__Sulfurimonas sp015488615", "ani": 77.4305, "matched_fragments": 132, "total_fragments": 773, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Sulfurimonadaceae;g__Sulfurimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.68", "min_intra_species_ani": "99.68", "mean_intra_species_af": "0.82", "min_intra_species_af": "0.82", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_018825665.1", "gtdb_species": "s__Sulfurimonas sp018825665", "ani": 77.2191, "matched_fragments": 138, "total_fragments": 773, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Sulfurimonadaceae;g__Sulfurimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.97", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.262, "cell_length": 0.176, "doubling_h": 1.211, "growth_tmp": 26.012, "optimum_tmp": 27.041, "optimum_ph": 6.425, "genome_size": 2218927.444, "gc_content": 34.843, "coding_genes": 2129.166, "rRNA16S_genes": 4.0, "tRNA_genes": 43.5, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.666, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.333, "aerobic_respiration": 0.666, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.666, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.333 }, "_genome_taxon": [ "Sulfurimonas", "sediminis" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }