{ "type": "genome", "identifier": "GCF_014905395.1", "organism": "Lactococcus taiwanensis", "title": "Lactococcus taiwanensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Northeast Agricultural University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014905395.1", "bioproject": "PRJNA224116", "biosample": "SAMD00246906", "wgs_master": "BNDT00000000.1", "refseq_category": "na", "taxid": "1151742", "species_taxid": "1151742", "organism_name": "Lactococcus taiwanensis", "infraspecific_name": "strain=NBRC 109049", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/19", "asm_name": "ASM1490539v1", "asm_submitter": "Northeast Agricultural University", "gbrs_paired_asm": "GCA_014905395.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/905/395/GCF_014905395.1_ASM1490539v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "1956764", "genome_size_ungapped": "1956764", "gc_percent": "38.500000", "replicon_count": "0", "scaffold_count": "17", "contig_count": "17", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014905395.1-RS_2024_09_02", "annotation_date": "2024-09-02", "total_gene_count": "1911", "protein_coding_gene_count": "1837", "non_coding_gene_count": "62", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-19", "dateModified": "2020-09-19", "datePublished": "2020-09-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Lactococcus taiwanensis" ], "sample_taxid": [ "1151742" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "0.556 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "1956764", "Number of Sequences": "17", "Longest Sequences (bp)": "480177", "N50 (bp)": "327017", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "38.7", "Number of CDSs": "1848", "Average Protein Length": "307.3", "Coding Ratio (%)": "87.1", "Number of rRNAs": "5", "Number of tRNAs": "50", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Lactococcus taiwanensis", "strain": "strain=NBRC 109049", "accession": "GCA_014905395.1", "taxid": 1151742, "species_taxid": 1151742, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 644, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactococcus lactis", "strain": "strain=ATCC 19435", "accession": "GCA_900099625.1", "taxid": 1358, "species_taxid": 1358, "relation_to_type": "type", "validated": true, "ani": 84.534, "matched_fragments": 327, "total_fragments": 645, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactococcus lactis subsp. hordniae", "strain": "strain=DSM 20450", "accession": "GCA_002441785.1", "taxid": 203404, "species_taxid": 1358, "relation_to_type": "type", "validated": true, "ani": 84.1704, "matched_fragments": 324, "total_fragments": 645, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactococcus lactis subsp. hordniae", "strain": "strain=CCUG 32210T", "accession": "GCA_008692945.1", "taxid": 203404, "species_taxid": 1358, "relation_to_type": "type", "validated": true, "ani": 84.1633, "matched_fragments": 328, "total_fragments": 645, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactococcus lactis subsp. hordniae", "strain": "strain=NBRC 100931", "accession": "GCA_001591725.1", "taxid": 203404, "species_taxid": 1358, "relation_to_type": "type", "validated": true, "ani": 84.1238, "matched_fragments": 332, "total_fragments": 645, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactococcus cremoris", "strain": "strain=ATCC 19257", "accession": "GCA_004354515.1", "taxid": 1359, "species_taxid": 1359, "relation_to_type": "type", "validated": true, "ani": 82.0522, "matched_fragments": 308, "total_fragments": 645, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactococcus cremoris subsp. cremoris", "strain": "strain=NBRC 100676", "accession": "GCA_001591705.1", "taxid": 2816960, "species_taxid": 1359, "relation_to_type": "type", "validated": true, "ani": 81.9758, "matched_fragments": 310, "total_fragments": 645, "ani_threshold": 95, "status": "below_threshold" }, { 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19320", "accession": "GCA_006965445.1", "taxid": 2592653, "species_taxid": 2592653, "relation_to_type": "type", "validated": true, "ani": 79.0974, "matched_fragments": 234, "total_fragments": 645, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactococcus formosensis subsp. bovis", "strain": "strain=LMG 30663", "accession": "GCA_018403725.1", "taxid": 1850438, "species_taxid": 1281486, "relation_to_type": "type", "validated": true, "ani": 78.5604, "matched_fragments": 111, "total_fragments": 645, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactococcus petauri", "strain": "strain=159469", "accession": "GCA_002154895.1", "taxid": 1940789, "species_taxid": 1940789, "relation_to_type": "type", "validated": true, "ani": 78.2597, "matched_fragments": 120, "total_fragments": 645, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { 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