{ "type": "genome", "identifier": "GCF_014905475.1", "organism": "Virgibacillus massiliensis", "title": "Virgibacillus massiliensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Applied Microbiology, Course of Applied Marine Biosciences, Graduate School of Marine Science and Technology, Tokyo University of Marine Sicience and Technology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014905475.1", "bioproject": "PRJNA224116", "biosample": "SAMD00244802", "wgs_master": "BNER00000000.1", "refseq_category": "na", "taxid": "1462526", "species_taxid": "1462526", "organism_name": "Virgibacillus massiliensis", "infraspecific_name": "strain=Vm-5", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/25", "asm_name": "ASM1490547v1", "asm_submitter": "Applied Microbiology, Course of Applied Marine Biosciences, Graduate School of Marine Science and Technology, Tokyo University of Marine Sicience and Technology", "gbrs_paired_asm": "GCA_014905475.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/905/475/GCF_014905475.1_ASM1490547v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4492998", "genome_size_ungapped": "4492903", "gc_percent": "37.000000", "replicon_count": "0", "scaffold_count": "402", "contig_count": "402", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014905475.1-RS_2024_08_15", "annotation_date": "2024-08-15", "total_gene_count": "4627", "protein_coding_gene_count": "4385", "non_coding_gene_count": "95", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-25", "dateModified": "2020-09-25", "datePublished": "2020-09-25", 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182710, "species_taxid": 182710, "relation_to_type": "type", "validated": true, "ani": 77.0649, "matched_fragments": 153, "total_fragments": 1440, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanobacillus sojae", "strain": "strain=NBRC 105379", "accession": "GCA_007991515.1", "taxid": 582851, "species_taxid": 582851, "relation_to_type": "type", "validated": true, "ani": 76.9991, "matched_fragments": 91, "total_fragments": 1440, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanobacillus senegalensis", "strain": "strain=Marseille-P3587", "accession": "GCA_900176885.1", "taxid": 1936063, "species_taxid": 1936063, "relation_to_type": "type", "validated": true, "ani": 76.975, "matched_fragments": 140, "total_fragments": 1440, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanobacillus halophilus", "strain": "strain=DSM 23996", "accession": "GCA_003628505.1", "taxid": 930130, "species_taxid": 930130, 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76.398, "matched_fragments": 75, "total_fragments": 1440, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Metabacillus endolithicus", "strain": "strain=KCTC 33579", "accession": "GCA_023078335.1", "taxid": 1535204, "species_taxid": 1535204, "relation_to_type": "type", "validated": true, "ani": 76.0703, "matched_fragments": 59, "total_fragments": 1440, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 15.34, "strain_heterogeneity": 25.0 }, "gtdb_result": [ { "accession": "GCF_014905415.1", "gtdb_species": "s__Virgibacillus salexigens", "ani": 99.5405, "matched_fragments": 1312, "total_fragments": 1440, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Amphibacillaceae;g__Virgibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.53", "min_intra_species_ani": "99.42", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.91", "num_clustered_genomes": 9, 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