{
    "type": "genome",
    "identifier": "GCF_014925295.1",
    "organism": "Pseudoalteromonas carrageenovora IAM 12662",
    "title": "Pseudoalteromonas carrageenovora IAM 12662",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Shandong University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_014925295.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN03380235",
        "wgs_master": "AQGW00000000.1",
        "refseq_category": "na",
        "taxid": "1314868",
        "species_taxid": "227",
        "organism_name": "Pseudoalteromonas carrageenovora IAM 12662",
        "infraspecific_name": "strain=IAM 12662",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Chromosome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/10/07",
        "asm_name": "ASM1492529v1",
        "asm_submitter": "Shandong University",
        "gbrs_paired_asm": "GCA_014925295.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/925/295/GCF_014925295.1_ASM1492529v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4560230",
        "genome_size_ungapped": "4560230",
        "gc_percent": "39.500000",
        "replicon_count": "1",
        "scaffold_count": "25",
        "contig_count": "25",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_014925295.1-RS_2024_11_20",
        "annotation_date": "2024-11-20",
        "total_gene_count": "4089",
        "protein_coding_gene_count": "3935",
        "non_coding_gene_count": "114",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-10-07",
    "dateModified": "2020-10-07",
    "datePublished": "2020-10-07",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Pseudoalteromonas carrageenovora IAM 12662"
        ],
        "sample_taxid": [
            "1314868"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Japan"
        ],
        "sample_host_location_id": [],
        "data_size": "1.285 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4560230",
        "Number of Sequences": "25",
        "Longest Sequences (bp)": "1029681",
        "N50 (bp)": "700568",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "39.4",
        "Number of CDSs": "4005",
        "Average Protein Length": "334.8",
        "Coding Ratio (%)": "88.2",
        "Number of rRNAs": "3",
        "Number of tRNAs": "95",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Pseudoalteromonas carrageenovora",
                "strain": "strain=IAM 12662",
                "accession": "GCA_014925295.1",
                "taxid": 227,
                "species_taxid": 227,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1509,
                "total_fragments": 1510,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Pseudoalteromonas carrageenovora",
                "strain": "strain=ATCC 43555",
                "accession": "GCA_900239935.1",
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                "species_taxid": 227,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9756,
                "matched_fragments": 1503,
                "total_fragments": 1510,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Pseudoalteromonas carrageenovora",
                "strain": "strain=NBRC 12985",
                "accession": "GCA_006539245.1",
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                "species_taxid": 227,
                "relation_to_type": "type",
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                "total_fragments": 1510,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Pseudoalteromonas espejiana",
                "strain": "strain=ATCC 29659",
                "accession": "GCA_002221525.1",
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                "species_taxid": 28107,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.0343,
                "matched_fragments": 1134,
                "total_fragments": 1510,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudoalteromonas espejiana",
                "strain": "strain=NBRC 102222",
                "accession": "GCA_007989585.1",
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                "species_taxid": 28107,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.8508,
                "matched_fragments": 1106,
                "total_fragments": 1510,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudoalteromonas distincta",
                "strain": "strain=ATCC 700518",
                "accession": "GCA_000814675.1",
                "taxid": 77608,
                "species_taxid": 77608,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.607,
                "matched_fragments": 1136,
                "total_fragments": 1510,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudoalteromonas marina",
                "strain": "strain=DSM 17587",
                "accession": "GCA_000238335.4",
                "taxid": 267375,
                "species_taxid": 267375,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.4098,
                "matched_fragments": 945,
                "total_fragments": 1510,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudoalteromonas rhizosphaerae",
                "strain": "strain=RA15",
                "accession": "GCA_902498845.1",
                "taxid": 2518973,
                "species_taxid": 2518973,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.197,
                "matched_fragments": 638,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Motilimonas cestriensis",
                "strain": "strain=MKS20",
                "accession": "GCA_021295315.1",
                "taxid": 2742685,
                "species_taxid": 2742685,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8726,
                "matched_fragments": 73,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Shewanella marinintestina",
                "strain": "strain=LMG 21403",
                "accession": "GCA_023283845.1",
                "taxid": 190305,
                "species_taxid": 190305,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5885,
                "matched_fragments": 65,
                "total_fragments": 1510,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900239935.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Pseudoalteromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.00",
                "min_intra_species_ani": "96.44",
                "mean_intra_species_af": "0.97",
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                "num_clustered_genomes": 6,
                "status": "conclusive"
            },
            {
                "accession": "GCF_018100985.1",
                "gtdb_species": "s__Pseudoalteromonas sp018100985",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Pseudoalteromonas",
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                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_002221525.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Pseudoalteromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
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            },
            {
                "accession": "GCA_007988745.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Pseudoalteromonas",
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                "num_clustered_genomes": 29,
                "status": "-"
            },
            {
                "accession": "GCF_008370255.1",
                "gtdb_species": "s__Pseudoalteromonas sp008370255",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
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            },
            {
                "accession": "GCA_000814675.1",
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            },
            {
                "accession": "GCF_011378855.1",
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            },
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
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    "_genome_taxon": [
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        "carrageenovora",
        "IAM",
        "12662"
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}