{ "type": "genome", "identifier": "GCF_014925325.1", "organism": "Pseudoalteromonas luteoviolacea DSM 6061", "title": "Pseudoalteromonas luteoviolacea DSM 6061", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shandong University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014925325.1", "bioproject": "PRJNA224116", "biosample": "SAMN03380239", "wgs_master": "AQHB00000000.1", "refseq_category": "na", "taxid": "1365250", "species_taxid": "43657", "organism_name": "Pseudoalteromonas luteoviolacea DSM 6061", "infraspecific_name": "strain=CH130", "isolate": "na", "version_status": "latest", "assembly_level": "Chromosome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/10/07", "asm_name": "ASM1492532v1", "asm_submitter": "Shandong University", "gbrs_paired_asm": "GCA_014925325.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/925/325/GCF_014925325.1_ASM1492532v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6062137", "genome_size_ungapped": "6062137", "gc_percent": "42.000000", "replicon_count": "1", "scaffold_count": "49", "contig_count": "49", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014925325.1-RS_2024_11_20", "annotation_date": "2024-11-20", "total_gene_count": "5254", "protein_coding_gene_count": "4984", "non_coding_gene_count": "225", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-10-07", "dateModified": "2020-10-07", "datePublished": "2020-10-07", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudoalteromonas luteoviolacea DSM 6061" ], "sample_taxid": [ "1365250" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "France: Nice" ], "sample_host_location_id": [], "data_size": "1.711 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6062137", "Number of Sequences": "49", "Longest Sequences (bp)": "1228927", "N50 (bp)": "384841", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "41.8", "Number of CDSs": "5026", "Average Protein Length": "347.3", "Coding Ratio (%)": "86.4", "Number of rRNAs": "4", "Number of tRNAs": "210", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudoalteromonas luteoviolacea", "strain": "strain=CH130", "accession": "GCA_014925325.1", "taxid": 43657, "species_taxid": 43657, 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"matched_fragments": 310, "total_fragments": 1996, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas caenipelagi", "strain": "strain=JBTF-M23", "accession": "GCA_013140855.1", "taxid": 2726988, "species_taxid": 2726988, "relation_to_type": "type", "validated": true, "ani": 79.0798, "matched_fragments": 266, "total_fragments": 1996, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas amylolytica", "strain": "strain=JW1", "accession": "GCA_001854605.1", "taxid": 1859457, "species_taxid": 1859457, "relation_to_type": "type", "validated": true, "ani": 79.0748, "matched_fragments": 270, "total_fragments": 1996, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas peptidolytica", "strain": "strain=DSM 14001", "accession": "GCA_012641745.1", "taxid": 61150, "species_taxid": 61150, "relation_to_type": "type", "validated": true, "ani": 79.0741, "matched_fragments": 263, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio comitans", "strain": "strain=LMG 23416", "accession": "GCA_024346835.1", "taxid": 413401, "species_taxid": 413401, "relation_to_type": "type", "validated": true, "ani": 78.2369, "matched_fragments": 51, "total_fragments": 1996, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio pelagius", "strain": "strain=ATCC 25916", "accession": "GCA_024347575.1", "taxid": 28169, "species_taxid": 28169, "relation_to_type": "type", "validated": true, "ani": 78.2253, "matched_fragments": 69, "total_fragments": 1996, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas rhizosphaerae", "strain": "strain=RA15", "accession": "GCA_902498845.1", "taxid": 2518973, "species_taxid": 2518973, "relation_to_type": "type", "validated": true, "ani": 78.1992, "matched_fragments": 192, "total_fragments": 1996, "ani_threshold": 95, "status": "below_threshold" }, { 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