{
    "type": "genome",
    "identifier": "GCF_014946775.2",
    "organism": "Pectobacterium quasiaquaticum",
    "title": "Pectobacterium quasiaquaticum",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Sorbonne University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_014946775.2",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN16178566",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "2774015",
        "species_taxid": "2774015",
        "organism_name": "Pectobacterium quasiaquaticum",
        "infraspecific_name": "strain=A477-S1-J17",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/05/26",
        "asm_name": "ASM1494677v2",
        "asm_submitter": "Sorbonne University",
        "gbrs_paired_asm": "GCA_014946775.2",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/946/775/GCF_014946775.2_ASM1494677v2",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4469125",
        "genome_size_ungapped": "4469125",
        "gc_percent": "51.500000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_014946775.2-RS_2024_05_30",
        "annotation_date": "2024-05-30",
        "total_gene_count": "4093",
        "protein_coding_gene_count": "3855",
        "non_coding_gene_count": "105",
        "pubmed_id": "34633924"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-05-26",
    "dateModified": "2022-05-26",
    "datePublished": "2022-05-26",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Pectobacterium quasiaquaticum"
        ],
        "sample_taxid": [
            "2774015"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "France: Irrigation canal at Logis Neuf"
        ],
        "sample_host_location_id": [],
        "data_size": "1.265 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": 211.0,
            "max": 211.0
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4469125",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "4469125",
        "N50 (bp)": "4469125",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "51.7",
        "Number of CDSs": "3984",
        "Average Protein Length": "317.6",
        "Coding Ratio (%)": "84.9",
        "Number of rRNAs": "22",
        "Number of tRNAs": "76",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Pectobacterium quasiaquaticum",
                "strain": "strain=A477-S1-J17",
                "accession": "GCA_014946775.2",
                "taxid": 2774015,
                "species_taxid": 2774015,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1486,
                "total_fragments": 1489,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Pectobacterium aquaticum",
                "strain": "strain=A212-S19-A16",
                "accession": "GCA_003382565.3",
                "taxid": 2204145,
                "species_taxid": 2204145,
                "relation_to_type": "type",
                "validated": true,
                "ani": 95.7968,
                "matched_fragments": 1268,
                "total_fragments": 1489,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Pectobacterium brasiliense",
                "strain": "strain=IPO:3540 CFBP:6617 ATCC:BAA-417 IBSBF:1692",
                "accession": "GCA_016950255.1",
                "taxid": 180957,
                "species_taxid": 180957,
                "relation_to_type": "type",
                "validated": true,
                "ani": 94.0898,
                "matched_fragments": 1249,
                "total_fragments": 1489,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pectobacterium brasiliense",
                "strain": "strain=LMG 21371",
                "accession": "GCA_000754695.1",
                "taxid": 180957,
                "species_taxid": 180957,
                "relation_to_type": "type",
                "validated": true,
                "ani": 94.0183,
                "matched_fragments": 1233,
                "total_fragments": 1489,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pectobacterium polaris",
                "strain": "strain=NIBIO1006",
                "accession": "GCA_002307355.1",
                "taxid": 2042057,
                "species_taxid": 2042057,
                "relation_to_type": "type",
                "validated": true,
                "ani": 93.5695,
                "matched_fragments": 1231,
                "total_fragments": 1489,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pectobacterium versatile",
                "strain": "strain=CFBP6051",
                "accession": "GCA_004296685.1",
                "taxid": 2488639,
                "species_taxid": 2488639,
                "relation_to_type": "type",
                "validated": true,
                "ani": 93.2601,
                "matched_fragments": 1230,
                "total_fragments": 1489,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pectobacterium parvum",
                "strain": "strain=s0421",
                "accession": "GCA_900195285.2",
                "taxid": 2778550,
                "species_taxid": 2778550,
                "relation_to_type": "type",
                "validated": true,
                "ani": 93.1696,
                "matched_fragments": 1158,
                "total_fragments": 1489,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pectobacterium carotovorum",
                "strain": "strain=DSM 30168",
                "accession": "GCA_900129615.1",
                "taxid": 554,
                "species_taxid": 554,
                "relation_to_type": "type",
                "validated": true,
                "ani": 93.1369,
                "matched_fragments": 1216,
                "total_fragments": 1489,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pectobacterium odoriferum",
                "strain": "strain=NCPPB 3839",
                "accession": "GCA_000754765.1",
                "taxid": 78398,
                "species_taxid": 78398,
                "relation_to_type": "type",
                "validated": true,
                "ani": 92.3391,
                "matched_fragments": 1204,
                "total_fragments": 1489,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pectobacterium colocasium",
                "strain": "strain=LJ1",
                "accession": "GCA_020181655.1",
                "taxid": 2878098,
                "species_taxid": 2878098,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.1547,
                "matched_fragments": 1233,
                "total_fragments": 1489,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Serratia bockelmannii",
                "strain": "strain=S3",
                "accession": "GCA_008011855.1",
                "taxid": 2703793,
                "species_taxid": 2703793,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6086,
                "matched_fragments": 419,
                "total_fragments": 1489,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rahnella bonaserana",
                "strain": "strain=H11b",
                "accession": "GCA_019049675.1",
                "taxid": 2816248,
                "species_taxid": 2816248,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5487,
                "matched_fragments": 388,
                "total_fragments": 1489,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rahnella ecdela",
                "strain": "strain=FRB 231",
                "accession": "GCA_019049625.1",
                "taxid": 2816250,
                "species_taxid": 2816250,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3372,
                "matched_fragments": 390,
                "total_fragments": 1489,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
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                "accession": "GCF_003382565.2",
                "gtdb_species": "s__Pectobacterium aquaticum",
                "ani": 95.7523,
                "matched_fragments": 1244,
                "total_fragments": 1489,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Pectobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.07",
                "min_intra_species_ani": "95.76",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 15,
                "status": "inconclusive"
            },
            {
                "accession": "GCF_013449685.1",
                "gtdb_species": "s__Pectobacterium brasiliense_A",
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                "matched_fragments": 1225,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Pectobacterium",
                "ani_circumscription_radius": 95.0,
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                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 5,
                "status": "inconclusive"
            },
            {
                "accession": "GCF_000754695.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Pectobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.37",
                "min_intra_species_ani": "95.20",
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                "num_clustered_genomes": 92,
                "status": "-"
            },
            {
                "accession": "GCF_002307355.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Pectobacterium",
                "ani_circumscription_radius": 95.0,
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                "num_clustered_genomes": 21,
                "status": "-"
            },
            {
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                "num_clustered_genomes": 81,
                "status": "-"
            },
            {
                "accession": "GCF_000803315.1",
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            },
            {
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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            {
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                "gtdb_species": "s__Pectobacterium betavasculorum",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Pectobacterium",
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                "mean_intra_species_ani": "99.45",
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                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 2,
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
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        "cell_length": null,
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    "_genome_taxon": [
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        "quasiaquaticum"
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}