{
    "type": "genome",
    "identifier": "GCF_014947195.2",
    "organism": "Paenibacillus rhizolycopersici",
    "title": "Paenibacillus rhizolycopersici",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Chinese Academy of Agricultural Sciences",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_014947195.2",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN16450134",
        "wgs_master": "JADCNN000000000.2",
        "refseq_category": "reference genome",
        "taxid": "2780073",
        "species_taxid": "2780073",
        "organism_name": "Paenibacillus rhizolycopersici",
        "infraspecific_name": "strain=DXFW5",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/02/16",
        "asm_name": "ASM1494719v2",
        "asm_submitter": "Chinese Academy of Agricultural Sciences",
        "gbrs_paired_asm": "GCA_014947195.2",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/947/195/GCF_014947195.2_ASM1494719v2",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4991113",
        "genome_size_ungapped": "4991113",
        "gc_percent": "53.000000",
        "replicon_count": "0",
        "scaffold_count": "59",
        "contig_count": "59",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2024-03-08",
        "total_gene_count": "4623",
        "protein_coding_gene_count": "4517",
        "non_coding_gene_count": "77",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-02-16",
    "dateModified": "2021-02-16",
    "datePublished": "2021-02-16",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Paenibacillus rhizolycopersici"
        ],
        "sample_taxid": [
            "2780073"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China: Beijing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.427 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
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    "_dfast": {
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        "Number of Sequences": "59",
        "Longest Sequences (bp)": "540347",
        "N50 (bp)": "201405",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "52.9",
        "Number of CDSs": "4580",
        "Average Protein Length": "319.0",
        "Coding Ratio (%)": "87.8",
        "Number of rRNAs": "2",
        "Number of tRNAs": "70",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Paenibacillus timonensis",
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                "species_taxid": 225915,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus phocaensis",
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                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus barengoltzii",
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                "accession": "GCA_004000745.1",
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                "species_taxid": 343517,
                "relation_to_type": "type",
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                "total_fragments": 1638,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus oralis",
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                "accession": "GCA_003863965.1",
                "taxid": 2490856,
                "species_taxid": 2490856,
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                "validated": true,
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                "matched_fragments": 716,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus macerans",
                "strain": "strain=ATCC 8244",
                "accession": "GCA_000746875.1",
                "taxid": 44252,
                "species_taxid": 44252,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.4342,
                "matched_fragments": 715,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus tianjinensis",
                "strain": "strain=TB2019",
                "accession": "GCA_017086365.1",
                "taxid": 2810347,
                "species_taxid": 2810347,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1286,
                "matched_fragments": 153,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus albicereus",
                "strain": "strain=UniB2",
                "accession": "GCA_012676905.1",
                "taxid": 2726185,
                "species_taxid": 2726185,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4535,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus artemisiicola",
                "strain": "strain=MWE-103",
                "accession": "GCA_017652985.1",
                "taxid": 1172618,
                "species_taxid": 1172618,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2984,
                "matched_fragments": 164,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
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            "contamination": 0.0,
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        "gtdb_result": [
            {
                "accession": "GCF_009725205.1",
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                "total_fragments": 1638,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus_A",
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                "num_clustered_genomes": 3,
                "status": "conclusive"
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            {
                "accession": "GCA_900766135.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus_A",
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                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
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                "accession": "GCF_900021165.1",
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                "status": "-"
            },
            {
                "accession": "GCF_000159955.1",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.187,
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        "growth_tmp": 30.106,
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        "genome_size": 6197949.921,
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        "gram_stain": 1.0,
        "sporulation": 1.0,
        "motility": 0.918,
        "range_salinity": 0.0,
        "facultative_respiration": 0.347,
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        "mesophilic_range_tmp": 0.9,
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        "psychrophilic_range_tmp": 0.066,
        "bacillus_cell_shape": 1.0,
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        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Paenibacillus",
        "rhizolycopersici"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}