{ "type": "genome", "identifier": "GCF_014982515.1", "organism": "Cytobacillus luteolus", "title": "Cytobacillus luteolus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Bacillus luteolus YIM 93174", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014982515.1", "bioproject": "PRJNA224116", "biosample": "SAMN16419212", "wgs_master": "JADCLJ000000000.1", "refseq_category": "reference genome", "taxid": "682179", "species_taxid": "682179", "organism_name": "Cytobacillus luteolus", "infraspecific_name": "strain=YIM 93174", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/10/25", "asm_name": "ASM1498251v1", "asm_submitter": "Bacillus luteolus YIM 93174", "gbrs_paired_asm": "GCA_014982515.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/982/515/GCF_014982515.1_ASM1498251v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4208210", "genome_size_ungapped": "4208210", "gc_percent": "36.500000", "replicon_count": "0", "scaffold_count": "25", "contig_count": "25", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014982515.1-RS_2024_11_26", "annotation_date": "2024-11-26", "total_gene_count": "4392", "protein_coding_gene_count": "4270", "non_coding_gene_count": "90", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-10-25", "dateModified": "2020-10-25", "datePublished": "2020-10-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Cytobacillus luteolus" ], "sample_taxid": [ "682179" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "1.189 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4208210", "Number of Sequences": "25", "Longest Sequences (bp)": "694929", "N50 (bp)": "473315", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "36.3", "Number of CDSs": "4314", "Average Protein Length": "277.6", "Coding Ratio (%)": "85.4", "Number of rRNAs": "0", "Number of tRNAs": "77", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Cytobacillus luteolus", "strain": "strain=YIM 93174", "accession": "GCA_014982515.1", "taxid": 682179, "species_taxid": 682179, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1388, "total_fragments": 1390, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Cytobacillus luteolus", "strain": "strain=DSM 22388", "accession": "GCA_017873715.1", "taxid": 682179, "species_taxid": 682179, "relation_to_type": "type", "validated": true, "ani": 99.9978, "matched_fragments": 1388, "total_fragments": 1390, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Litchfieldia salsa", "strain": "strain=IBRC-M10078", "accession": "GCA_900104555.1", "taxid": 930152, "species_taxid": 930152, "relation_to_type": "type", "validated": true, "ani": 77.7174, "matched_fragments": 230, "total_fragments": 1390, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Litchfieldia alkalitelluris", "strain": "strain=DSM 16976", "accession": "GCA_002019645.1", "taxid": 304268, "species_taxid": 304268, "relation_to_type": "type", "validated": true, "ani": 77.4701, "matched_fragments": 227, "total_fragments": 1390, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gottfriedia endophyticus", "strain": "strain=RG28", "accession": "GCA_017814275.1", "taxid": 2820819, "species_taxid": 2820819, "relation_to_type": "type", "validated": true, "ani": 77.2209, "matched_fragments": 102, "total_fragments": 1390, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Metabacillus halosaccharovorans", "strain": "strain=DSM 25387", "accession": "GCA_002019635.1", "taxid": 930124, "species_taxid": 930124, "relation_to_type": "type", "validated": true, "ani": 76.9954, "matched_fragments": 149, "total_fragments": 1390, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Metabacillus bambusae", "strain": "strain=BG109", "accession": "GCA_017497975.1", "taxid": 2795218, "species_taxid": 2795218, "relation_to_type": "type", "validated": true, "ani": 76.921, "matched_fragments": 155, "total_fragments": 1390, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoneobacillus rhizosphaerae", "strain": "strain=CIP 111885", "accession": "GCA_917563885.1", "taxid": 2880968, "species_taxid": 2880968, "relation_to_type": "type", "validated": true, "ani": 76.8912, "matched_fragments": 135, "total_fragments": 1390, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Metabacillus litoralis", "strain": "strain=SW-211", "accession": "GCA_007994985.1", "taxid": 152268, "species_taxid": 152268, "relation_to_type": "suspected-type", "validated": true, "ani": 76.8517, "matched_fragments": 177, "total_fragments": 1390, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus zhangzhouensis", "strain": "strain=DW5-4", "accession": "GCA_000715205.1", "taxid": 1178540, "species_taxid": 1178540, "relation_to_type": "type", "validated": true, "ani": 76.7331, "matched_fragments": 68, "total_fragments": 1390, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cytobacillus praedii", "strain": "strain=FJAT-25547", "accession": "GCA_001439605.1", "taxid": 1742358, "species_taxid": 1742358, "relation_to_type": "type", "validated": true, "ani": 76.683, "matched_fragments": 108, "total_fragments": 1390, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Metabacillus schmidteae", "strain": "strain=Marseille-P9898", "accession": "GCA_903166545.1", "taxid": 2730405, "species_taxid": 2730405, "relation_to_type": "type", "validated": true, "ani": 76.6094, "matched_fragments": 149, "total_fragments": 1390, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Anoxybacillus vitaminiphilus", "strain": "strain=CGMCC 1.8979", "accession": "GCA_003259935.1", "taxid": 581036, "species_taxid": 581036, "relation_to_type": "type", "validated": true, "ani": 76.6024, "matched_fragments": 82, "total_fragments": 1390, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Niallia nealsonii", "strain": "strain=FO-92", "accession": "GCA_002835805.1", "taxid": 115979, "species_taxid": 115979, "relation_to_type": "type", "validated": true, "ani": 76.5071, "matched_fragments": 97, "total_fragments": 1390, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neobacillus kokaensis", "strain": "strain=LOB 377", "accession": "GCA_014656545.1", "taxid": 2759023, "species_taxid": 2759023, "relation_to_type": "type", "validated": true, "ani": 76.4884, "matched_fragments": 95, "total_fragments": 1390, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Niallia alba", "strain": "strain=UniB3", "accession": "GCA_012933555.1", "taxid": 2729105, "species_taxid": 2729105, "relation_to_type": "type", "validated": true, "ani": 76.476, "matched_fragments": 98, "total_fragments": 1390, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Anaerobacillus arseniciselenatis", "strain": "strain=DSM 15340", "accession": "GCA_001865995.1", "taxid": 85682, "species_taxid": 85682, "relation_to_type": "type", "validated": true, "ani": 76.351, "matched_fragments": 54, "total_fragments": 1390, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_017873715.1", "gtdb_species": "s__Bacillus_BV luteolus", "ani": 99.9978, "matched_fragments": 1388, "total_fragments": 1390, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_L;g__Bacillus_BV", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_014960805.1", "gtdb_species": "s__Bacillus_BV sp014960805", "ani": 89.5494, "matched_fragments": 1184, "total_fragments": 1390, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_L;g__Bacillus_BV", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900104555.1", "gtdb_species": "s__Litchfieldia salsa", "ani": 77.718, "matched_fragments": 230, "total_fragments": 1390, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_L;g__Litchfieldia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002734285.1", "gtdb_species": "s__Fredinandcohnia onubensis_A", "ani": 77.5031, "matched_fragments": 183, "total_fragments": 1390, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_L;g__Fredinandcohnia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002019645.1", "gtdb_species": "s__Litchfieldia alkalitelluris", "ani": 77.4727, "matched_fragments": 226, "total_fragments": 1390, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_L;g__Litchfieldia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003400205.1", "gtdb_species": "s__Fredinandcohnia sp003400205", "ani": 77.468, "matched_fragments": 175, "total_fragments": 1390, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_L;g__Fredinandcohnia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001439915.1", "gtdb_species": "s__Fredinandcohnia humi", "ani": 77.438, "matched_fragments": 171, "total_fragments": 1390, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_L;g__Fredinandcohnia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004799755.1", "gtdb_species": "s__Fredinandcohnia timonensis_A", "ani": 77.3149, "matched_fragments": 184, "total_fragments": 1390, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_L;g__Fredinandcohnia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000285535.1", "gtdb_species": "s__Fredinandcohnia timonensis", "ani": 76.9993, "matched_fragments": 188, "total_fragments": 1390, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_L;g__Fredinandcohnia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_017497975.1", "gtdb_species": "s__Metabacillus sp017497975", "ani": 76.9303, "matched_fragments": 155, "total_fragments": 1390, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Metabacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016908835.1", "gtdb_species": "s__Bacillus_AD endoradicis", "ani": 76.8392, "matched_fragments": 109, "total_fragments": 1390, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-1321;g__Bacillus_AD", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000482325.1", "gtdb_species": "s__Neobacillus sp000482325", "ani": 76.8113, "matched_fragments": 109, "total_fragments": 1390, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Neobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_009917645.1", "gtdb_species": "s__Robertmurraya sp009917645", "ani": 76.8006, "matched_fragments": 126, "total_fragments": 1390, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Robertmurraya", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000686805.1", "gtdb_species": "s__Neobacillus sp000686805", "ani": 76.7818, "matched_fragments": 106, "total_fragments": 1390, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Neobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003667825.1", "gtdb_species": "s__Metabacillus litoralis_B", "ani": 76.7809, "matched_fragments": 154, "total_fragments": 1390, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Metabacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.61", "min_intra_species_ani": "98.61", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002577655.1", "gtdb_species": "s__Metabacillus sp002577655", "ani": 76.7184, "matched_fragments": 150, "total_fragments": 1390, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Metabacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001591565.1", "gtdb_species": "s__Priestia flexa", "ani": 76.6738, "matched_fragments": 117, "total_fragments": 1390, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_H;g__Priestia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.12", "min_intra_species_ani": "98.83", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.87", "num_clustered_genomes": 15, "status": "-" }, { "accession": "GCF_000518865.1", "gtdb_species": "s__Metabacillus sp000518865", "ani": 76.5948, "matched_fragments": 142, "total_fragments": 1390, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Metabacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Cytobacillus", "luteolus" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }