{ "type": "genome", "identifier": "GCF_015070375.1", "organism": "Nocardioides kribbensis", "title": "Nocardioides kribbensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Contr", "publication": [ {} ], "properties": { "assembly_accession": "GCF_015070375.1", "bioproject": "PRJNA224116", "biosample": "SAMN16418969", "wgs_master": "JADCLL000000000.1", "refseq_category": "reference genome", "taxid": "305517", "species_taxid": "305517", "organism_name": "Nocardioides kribbensis", "infraspecific_name": "strain=DSM 16314", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/10/28", "asm_name": "ASM1507037v1", "asm_submitter": "National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Contr", "gbrs_paired_asm": "GCA_015070375.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/015/070/375/GCF_015070375.1_ASM1507037v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4117874", "genome_size_ungapped": "4117874", "gc_percent": "74.000000", "replicon_count": "0", "scaffold_count": "15", "contig_count": "15", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_015070375.1-RS_2024_11_26", "annotation_date": "2024-11-26", "total_gene_count": "3863", "protein_coding_gene_count": "3794", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-10-28", "dateModified": "2020-10-28", "datePublished": "2020-10-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Nocardioides kribbensis" ], "sample_taxid": [ "305517" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "1.067 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4117874", "Number of Sequences": "15", "Longest Sequences (bp)": "1249133", "N50 (bp)": "436100", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "74.0", "Number of CDSs": "3852", "Average Protein Length": "326.3", "Coding Ratio (%)": "91.6", "Number of rRNAs": "4", "Number of tRNAs": "52", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nocardioides kribbensis", "strain": "strain=DSM 16314", "accession": "GCA_015070375.1", "taxid": 305517, 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"type", "validated": true, "ani": 82.3319, "matched_fragments": 798, "total_fragments": 1365, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides lijunqiniae", "strain": "strain=S-531", "accession": "GCA_015024225.1", "taxid": 2760832, "species_taxid": 2760832, "relation_to_type": "type", "validated": true, "ani": 82.2427, "matched_fragments": 796, "total_fragments": 1365, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides dongkuii", "strain": "strain=S-713", "accession": "GCA_014127485.1", "taxid": 2760089, "species_taxid": 2760089, "relation_to_type": "type", "validated": true, "ani": 82.2347, "matched_fragments": 803, "total_fragments": 1365, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides marinus", "strain": "strain=DSM 18248", "accession": "GCA_013408145.1", "taxid": 374514, "species_taxid": 374514, "relation_to_type": "type", "validated": true, "ani": 82.2087, "matched_fragments": 825, "total_fragments": 1365, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides deserti", "strain": "strain=SC8A-24", "accession": "GCA_014266025.1", "taxid": 1588644, "species_taxid": 1588644, "relation_to_type": "type", "validated": true, "ani": 82.1431, "matched_fragments": 807, "total_fragments": 1365, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides deserti", "strain": "strain=CGMCC 4.7183", "accession": "GCA_014646035.1", "taxid": 1588644, "species_taxid": 1588644, "relation_to_type": "type", "validated": true, "ani": 82.1184, "matched_fragments": 824, "total_fragments": 1365, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides luti", "strain": "strain=KIGAM211", "accession": "GCA_014212315.1", "taxid": 2761101, "species_taxid": 2761101, "relation_to_type": "type", "validated": true, "ani": 82.0887, "matched_fragments": 812, "total_fragments": 1365, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides lianchengensis", "strain": "strain=CGMCC 4.6858", "accession": "GCA_013409225.1", "taxid": 1045774, "species_taxid": 1045774, "relation_to_type": "type", "validated": true, "ani": 81.9325, "matched_fragments": 891, "total_fragments": 1365, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides lianchengensis", "strain": "strain=CGMCC 4.6858", "accession": "GCA_900101465.1", "taxid": 1045774, "species_taxid": 1045774, "relation_to_type": "type", "validated": true, "ani": 81.9042, "matched_fragments": 894, "total_fragments": 1365, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides ungokensis", "strain": "strain=LMG 28591", "accession": "GCA_013466985.1", "taxid": 1643322, "species_taxid": 1643322, "relation_to_type": "type", "validated": true, "ani": 81.9035, "matched_fragments": 791, "total_fragments": 1365, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides litoris", "strain": "strain=DSM 103718", "accession": "GCA_006346315.1", "taxid": 1926648, "species_taxid": 1926648, "relation_to_type": "type", "validated": true, "ani": 81.8733, "matched_fragments": 854, "total_fragments": 1365, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides panaciterrulae", "strain": "strain=DSM 21350", "accession": "GCA_013409645.1", "taxid": 661492, "species_taxid": 661492, "relation_to_type": "type", "validated": true, "ani": 81.755, "matched_fragments": 769, "total_fragments": 1365, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides okcheonensis", "strain": "strain=MMS20-HV4-12", "accession": "GCA_020991065.1", "taxid": 2894081, "species_taxid": 2894081, "relation_to_type": "type", "validated": true, "ani": 81.1959, "matched_fragments": 772, "total_fragments": 1365, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides furvisabuli", "strain": "strain=JCM 13813", "accession": "GCA_021083185.1", "taxid": 375542, "species_taxid": 375542, "relation_to_type": "type", "validated": true, "ani": 81.1837, "matched_fragments": 718, "total_fragments": 1365, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides donggukensis", "strain": "strain=MJB4", "accession": "GCA_014842875.1", "taxid": 2774019, "species_taxid": 2774019, "relation_to_type": "type", "validated": true, "ani": 80.6944, "matched_fragments": 650, "total_fragments": 1365, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides humilatus", "strain": "strain=BN130099", "accession": "GCA_008373755.1", "taxid": 2607660, "species_taxid": 2607660, "relation_to_type": "type", "validated": true, "ani": 80.222, "matched_fragments": 650, "total_fragments": 1365, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides carbamazepini", "strain": 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1872709, "relation_to_type": "type", "validated": true, "ani": 76.0416, "matched_fragments": 279, "total_fragments": 1365, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_015070375.1", "gtdb_species": "s__Nocardioides kribbensis", "ani": 100.0, "matched_fragments": 1365, "total_fragments": 1365, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.79", "min_intra_species_ani": "97.79", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.92", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCF_013466785.1", "gtdb_species": "s__Nocardioides marinisabuli", "ani": 83.6004, "matched_fragments": 843, "total_fragments": 1365, "gtdb_taxonomy": 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