{
    "type": "genome",
    "identifier": "GCF_015140235.1",
    "organism": "Solibaculum mannosilyticum",
    "title": "Solibaculum mannosilyticum",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "National Institute of Genetics",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_015140235.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00236452",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "2780922",
        "species_taxid": "2780922",
        "organism_name": "Solibaculum mannosilyticum",
        "infraspecific_name": "strain=12CBH8",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/10/21",
        "asm_name": "ASM1514023v1",
        "asm_submitter": "National Institute of Genetics",
        "gbrs_paired_asm": "GCA_015140235.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/015/140/235/GCF_015140235.1_ASM1514023v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2541474",
        "genome_size_ungapped": "2541474",
        "gc_percent": "50.500000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_015140235.1-RS_2024_05_05",
        "annotation_date": "2024-05-05",
        "total_gene_count": "2357",
        "protein_coding_gene_count": "2276",
        "non_coding_gene_count": "69",
        "pubmed_id": "33913539"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-10-21",
    "dateModified": "2020-10-21",
    "datePublished": "2020-10-21",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Solibaculum mannosilyticum"
        ],
        "sample_taxid": [
            "2780922"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Japan"
        ],
        "sample_host_location_id": [],
        "data_size": "0.721 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2541474",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "2541474",
        "N50 (bp)": "2541474",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "50.6",
        "Number of CDSs": "2305",
        "Average Protein Length": "319.3",
        "Coding Ratio (%)": "86.9",
        "Number of rRNAs": "10",
        "Number of tRNAs": "54",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Solibaculum mannosilyticum",
                "strain": "strain=12CBH8",
                "accession": "GCA_015140235.1",
                "taxid": 2780922,
                "species_taxid": 2780922,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 847,
                "total_fragments": 847,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Faecalibacterium gallinarum",
                "strain": "strain=JCM 17207",
                "accession": "GCA_022180365.1",
                "taxid": 2903556,
                "species_taxid": 2903556,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.6267,
                "matched_fragments": 56,
                "total_fragments": 847,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Angelakisella massiliensis",
                "strain": "strain=Marseille-P3217",
                "accession": "GCA_900104675.1",
                "taxid": 1871018,
                "species_taxid": 1871018,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.2258,
                "matched_fragments": 77,
                "total_fragments": 847,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fournierella massiliensis",
                "strain": "strain=DSM 100451",
                "accession": "GCA_004345265.1",
                "taxid": 1650663,
                "species_taxid": 1650663,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.298,
                "matched_fragments": 71,
                "total_fragments": 847,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dysosmobacter welbionis",
                "strain": "strain=J115",
                "accession": "GCA_005121165.3",
                "taxid": 2093857,
                "species_taxid": 2093857,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.2427,
                "matched_fragments": 54,
                "total_fragments": 847,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ligaoa zhengdingensis",
                "strain": "strain=NSJ-31",
                "accession": "GCA_014384885.1",
                "taxid": 2763658,
                "species_taxid": 2763658,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8379,
                "matched_fragments": 68,
                "total_fragments": 847,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_015140235.1",
                "gtdb_species": "s__Solibaculum mannosilyticum",
                "ani": 100.0,
                "matched_fragments": 847,
                "total_fragments": 847,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Solibaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.49",
                "min_intra_species_ani": "98.34",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 5,
                "status": "conclusive"
            },
            {
                "accession": "GCA_904397895.1",
                "gtdb_species": "s__Solibaculum sp904397895",
                "ani": 83.3794,
                "matched_fragments": 510,
                "total_fragments": 847,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Solibaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900104675.1",
                "gtdb_species": "s__Angelakisella massiliensis",
                "ani": 80.5188,
                "matched_fragments": 77,
                "total_fragments": 847,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Angelakisella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018364155.1",
                "gtdb_species": "s__JAGZMM01 sp018364155",
                "ani": 77.4677,
                "matched_fragments": 81,
                "total_fragments": 847,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__JAGZMM01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_904420015.1",
                "gtdb_species": "s__JAGZMM01 sp904420015",
                "ani": 77.0077,
                "matched_fragments": 88,
                "total_fragments": 847,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__JAGZMM01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_904395335.1",
                "gtdb_species": "s__Avimonas_A narfia",
                "ani": 76.0505,
                "matched_fragments": 59,
                "total_fragments": 847,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Avimonas_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Solibaculum",
        "mannosilyticum"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}