{ "type": "genome", "identifier": "GCF_015160875.1", "organism": "Streptomyces chromofuscus", "title": "Streptomyces chromofuscus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Xinjiang University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_015160875.1", "bioproject": "PRJNA224116", "biosample": "SAMN16442616", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "42881", "species_taxid": "42881", "organism_name": "Streptomyces chromofuscus", "infraspecific_name": "strain=DSM 40273", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/11/01", "asm_name": "ASM1516087v1", "asm_submitter": "Xinjiang University", "gbrs_paired_asm": "GCA_015160875.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/015/160/875/GCF_015160875.1_ASM1516087v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7483282", "genome_size_ungapped": "7483282", "gc_percent": "71.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_015160875.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "6806", "protein_coding_gene_count": "6422", "non_coding_gene_count": "91", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-11-01", "dateModified": "2020-11-01", "datePublished": "2020-11-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptomyces chromofuscus" ], "sample_taxid": [ "42881" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany: Braunschweig" ], "sample_host_location_id": [], "data_size": "2.003 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 1.04, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7483282", "Number of Sequences": "1", "Longest Sequences (bp)": "7483282", "N50 (bp)": "7483282", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "71.6", "Number of CDSs": "6920", "Average Protein Length": "311.4", "Coding Ratio (%)": "86.4", "Number of rRNAs": "18", "Number of tRNAs": "82", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptomyces chromofuscus", "strain": "strain=DSM 40273", "accession": "GCA_015160875.1", "taxid": 42881, "species_taxid": 42881, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2494, "total_fragments": 2494, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptomyces chromofuscus", "strain": "strain=JCM 4354", "accession": "GCA_014649435.1", "taxid": 42881, "species_taxid": 42881, "relation_to_type": "type", "validated": true, "ani": 99.9645, "matched_fragments": 2444, "total_fragments": 2494, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptomyces gossypiisoli", "strain": "strain=TRM 44567", "accession": "GCA_013433285.1", "taxid": 2748864, "species_taxid": 2748864, "relation_to_type": "type", "validated": true, "ani": 91.1874, "matched_fragments": 1874, "total_fragments": 2494, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces spinoverrucosus", "strain": "strain=JCM 5077", "accession": "GCA_014651195.1", "taxid": 284043, "species_taxid": 284043, "relation_to_type": "type", "validated": true, "ani": 91.0138, "matched_fragments": 1890, "total_fragments": 2494, "ani_threshold": 95, "status": "below_threshold" }, { 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"strain": "strain=TRM63209", "accession": "GCA_009709555.1", "taxid": 2569855, "species_taxid": 2569855, "relation_to_type": "type", "validated": true, "ani": 85.3683, "matched_fragments": 1620, "total_fragments": 2494, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces cahuitamycinicus", "strain": "strain=13K301", "accession": "GCA_002891435.1", "taxid": 2070367, "species_taxid": 2070367, "relation_to_type": "type", "validated": true, "ani": 85.3595, "matched_fragments": 1388, "total_fragments": 2494, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces justiciae", "strain": "strain=3R004", "accession": "GCA_015163075.1", "taxid": 2780140, "species_taxid": 2780140, "relation_to_type": "type", "validated": true, "ani": 85.3013, "matched_fragments": 1741, "total_fragments": 2494, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces galbus", "strain": "strain=DSM 40089", "accession": 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