{ "type": "genome", "identifier": "GCF_015182315.1", "organism": "Cellvibrio polysaccharolyticus", "title": "Cellvibrio polysaccharolyticus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Seqomics Ltd.", "publication": [ {} ], "properties": { "assembly_accession": "GCF_015182315.1", "bioproject": "PRJNA224116", "biosample": "SAMN08474095", "wgs_master": "PRDL00000000.1", "refseq_category": "reference genome", "taxid": "2082724", "species_taxid": "2082724", "organism_name": "Cellvibrio polysaccharolyticus", "infraspecific_name": "strain=Ka43", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/11/02", "asm_name": "ASM1518231v1", "asm_submitter": "Seqomics Ltd.", "gbrs_paired_asm": "GCA_015182315.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/015/182/315/GCF_015182315.1_ASM1518231v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4261962", "genome_size_ungapped": "4261962", "gc_percent": "51.500000", "replicon_count": "0", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_015182315.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "3604", "protein_coding_gene_count": "3532", "non_coding_gene_count": "62", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-11-02", "dateModified": "2020-11-02", "datePublished": "2020-11-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Cellvibrio polysaccharolyticus" ], "sample_taxid": [ "2082724" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Hungary" ], "sample_host_location_id": [], "data_size": "1.203 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4261962", "Number of Sequences": "2", "Longest Sequences (bp)": "4258256", "N50 (bp)": "4258256", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "51.6", "Number of CDSs": "3618", "Average Protein Length": "340.4", "Coding Ratio (%)": "86.7", "Number of rRNAs": "9", "Number of tRNAs": "49", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Cellvibrio polysaccharolyticus", "strain": "strain=Ka43", "accession": "GCA_015182315.1", "taxid": 2082724, "species_taxid": 2082724, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1418, "total_fragments": 1420, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Cellvibrio japonicus", "strain": "strain=Ueda107", "accession": "GCA_000019225.1", "taxid": 155077, "species_taxid": 155077, "relation_to_type": "type", "validated": true, "ani": 77.5693, "matched_fragments": 200, "total_fragments": 1420, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellvibrio zantedeschiae", "strain": "strain=KCTC 32239", "accession": "GCA_014652535.1", "taxid": 1237077, "species_taxid": 1237077, "relation_to_type": "type", "validated": true, "ani": 77.4215, "matched_fragments": 141, "total_fragments": 1420, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Simiduia agarivorans", "strain": "strain=SA1 = DSM 21679", "accession": "GCA_000305785.2", "taxid": 447471, "species_taxid": 447471, "relation_to_type": "type", "validated": true, "ani": 77.1828, "matched_fragments": 107, "total_fragments": 1420, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinimicrobium agarilyticum", "strain": "strain=DSM 16975", "accession": "GCA_000423345.1", "taxid": 306546, "species_taxid": 306546, "relation_to_type": "type", "validated": true, "ani": 77.1554, "matched_fragments": 110, "total_fragments": 1420, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinimicrobium koreense", "strain": "strain=DSM 16974", "accession": "GCA_003762925.1", "taxid": 306545, "species_taxid": 306545, "relation_to_type": "type", "validated": true, "ani": 77.1173, "matched_fragments": 127, "total_fragments": 1420, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gilvimarinus polysaccharolyticus", "strain": "strain=YN3", "accession": "GCA_001187555.1", "taxid": 863921, "species_taxid": 863921, "relation_to_type": "type", "validated": true, "ani": 77.0216, "matched_fragments": 73, "total_fragments": 1420, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aestuariicella hydrocarbonica", "strain": "strain=JCM 30134", "accession": "GCA_011602365.1", "taxid": 1470433, "species_taxid": 1470433, "relation_to_type": "type", "validated": true, "ani": 76.8794, "matched_fragments": 80, "total_fragments": 1420, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas tohonis", "strain": "strain=TUM18999", "accession": "GCA_012767755.2", "taxid": 2725477, "species_taxid": 2725477, "relation_to_type": "type", "validated": true, "ani": 76.7349, "matched_fragments": 65, "total_fragments": 1420, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Simiduia agarivorans", "strain": "strain=DSM 21679", "accession": "GCA_000420285.1", "taxid": 447471, "species_taxid": 447471, "relation_to_type": "type", "validated": true, "ani": 76.6125, "matched_fragments": 99, "total_fragments": 1420, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinimicrobium alkaliphilum", "strain": "strain=SW121", "accession": "GCA_003259155.1", 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