{ "type": "genome", "identifier": "GCF_015207075.1", "organism": "Zarconia navalis LEGE 11467", "title": "Zarconia navalis LEGE 11467", "description": "na", "data type": "Genome sequencing and assembly", "organization": "CIIMAR", "publication": [ {} ], "properties": { "assembly_accession": "GCF_015207075.1", "bioproject": "PRJNA224116", "biosample": "SAMN16351752", "wgs_master": "JADEXN000000000.1", "refseq_category": "reference genome", "taxid": "1828826", "species_taxid": "2992134", "organism_name": "Zarconia navalis LEGE 11467", "infraspecific_name": "strain=LEGE 11467", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/11/02", "asm_name": "ASM1520707v1", "asm_submitter": "CIIMAR", "gbrs_paired_asm": "GCA_015207075.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/015/207/075/GCF_015207075.1_ASM1520707v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4198480", "genome_size_ungapped": "4198480", "gc_percent": "49.000000", "replicon_count": "0", "scaffold_count": "435", "contig_count": "435", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2023-11-22", "total_gene_count": "3771", "protein_coding_gene_count": "3557", "non_coding_gene_count": "41", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-11-02", "dateModified": "2020-11-02", "datePublished": "2020-11-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Zarconia navalis LEGE 11467" ], "sample_taxid": [ "1828826" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Portugal: 'A Pedra', diving spot in front of the fort 'Castelo do Queijo'" ], "sample_host_location_id": [], "data_size": "1.204 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 44.84, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4198480", "Number of Sequences": "435", "Longest Sequences (bp)": "32734", "N50 (bp)": "10186", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "49.0", "Number of CDSs": "2991", "Average Protein Length": "307.9", "Coding Ratio (%)": "65.8", "Number of rRNAs": "3", "Number of tRNAs": "36", "Number of CRISPRs": "5" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Baaleninema simplex", "strain": "strain=PCC 7105", "accession": "GCA_000332355.1", "taxid": 2862350, "species_taxid": 2862350, "relation_to_type": "type", "validated": true, "ani": 76.128, "matched_fragments": 90, "total_fragments": 1168, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 44.84, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_015207075.1", "gtdb_species": "s__LEGE-11467 sp015207075", "ani": 100.0, "matched_fragments": 1145, "total_fragments": 1168, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Geitlerinemaceae;g__LEGE-11467", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_015295945.1", "gtdb_species": "s__DVED01 sp003695795", "ani": 76.6394, "matched_fragments": 179, "total_fragments": 1168, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Geitlerinemaceae;g__DVED01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.89", "min_intra_species_ani": "99.88", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.93", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_000332355.1", "gtdb_species": "s__Geitlerinema sp000332355", "ani": 76.128, "matched_fragments": 90, "total_fragments": 1168, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Geitlerinemaceae;g__Geitlerinema", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_012911965.1", "gtdb_species": "s__Phormidium_A sp007126595", "ani": 76.0611, "matched_fragments": 52, "total_fragments": 1168, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Geitlerinemaceae;g__Phormidium_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.08", "min_intra_species_ani": "98.97", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.76", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_014696265.1", "gtdb_species": "s__FACHB-1375 sp014696265", "ani": 75.5843, "matched_fragments": 55, "total_fragments": 1168, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Phormidiaceae_A;g__FACHB-1375", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Zarconia", "navalis", "LEGE", "11467" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }