{ "type": "genome", "identifier": "GCF_015209725.1", "organism": "Novilysobacter ciconiae", "title": "Novilysobacter ciconiae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "KyungHee University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_015209725.1", "bioproject": "PRJNA224116", "biosample": "SAMN16492141", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2781022", "species_taxid": "2781022", "organism_name": "Novilysobacter ciconiae", "infraspecific_name": "strain=H21R20", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/11/03", "asm_name": "ASM1520972v1", "asm_submitter": "KyungHee University", "gbrs_paired_asm": "GCA_015209725.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/015/209/725/GCF_015209725.1_ASM1520972v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2914291", "genome_size_ungapped": "2914291", "gc_percent": "67.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_015209725.1-RS_2024_12_01", "annotation_date": "2024-12-01", "total_gene_count": "2628", "protein_coding_gene_count": "2535", "non_coding_gene_count": "58", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-11-03", "dateModified": "2020-11-03", "datePublished": "2020-11-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Novilysobacter ciconiae" ], "sample_taxid": [ "2781022" ], "sample_host_organism": [ "Ciconia boyciana (oriental stork)" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "0.795 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2914291", "Number of Sequences": "1", "Longest Sequences (bp)": "2914291", "N50 (bp)": "2914291", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.3", "Number of CDSs": "2610", "Average Protein Length": "342.8", "Coding Ratio (%)": "92.1", "Number of rRNAs": "6", "Number of tRNAs": "51", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Lysobacter ciconiae", "strain": "strain=H21R20", "accession": "GCA_015209725.1", "taxid": 2781022, "species_taxid": 2781022, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 971, 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{ "organism_name": "Lysobacter arseniciresistens", "strain": "strain=ZS79", "accession": "GCA_000768335.1", "taxid": 1385522, "species_taxid": 1385522, "relation_to_type": "type", "validated": true, "ani": 82.3685, "matched_fragments": 591, "total_fragments": 971, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter defluvii", "strain": "strain=IMMIB APB-9", "accession": "GCA_000769985.1", "taxid": 391738, "species_taxid": 391738, "relation_to_type": "type", "validated": true, "ani": 81.8122, "matched_fragments": 456, "total_fragments": 971, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter spongiicola", "strain": "strain=DSM 21749", "accession": "GCA_900167055.1", "taxid": 435289, "species_taxid": 435289, "relation_to_type": "type", "validated": true, "ani": 81.0656, "matched_fragments": 559, "total_fragments": 971, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter silvisoli", "strain": 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"vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Novilysobacter", "ciconiae" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }