{ "type": "genome", "identifier": "GCF_015221875.1", "organism": "Dyadobacter subterraneus", "title": "Dyadobacter subterraneus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Szent Istvan University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_015221875.1", "bioproject": "PRJNA224116", "biosample": "SAMN16192957", "wgs_master": "JACYGY000000000.1", "refseq_category": "reference genome", "taxid": "2773304", "species_taxid": "2773304", "organism_name": "Dyadobacter subterraneus", "infraspecific_name": "strain=UP-52", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/11/03", "asm_name": "ASM1522187v1", "asm_submitter": "Szent Istvan University", "gbrs_paired_asm": "GCA_015221875.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/015/221/875/GCF_015221875.1_ASM1522187v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7787995", "genome_size_ungapped": "7787895", "gc_percent": "40.000000", "replicon_count": "0", "scaffold_count": "20", "contig_count": "20", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_015221875.1-RS_2024_08_03", "annotation_date": "2024-08-03", "total_gene_count": "6587", "protein_coding_gene_count": "6486", "non_coding_gene_count": "56", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-11-03", "dateModified": "2020-11-03", "datePublished": "2020-11-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Dyadobacter subterraneus" ], "sample_taxid": [ "2773304" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Hungary: Tiszaujvaros" ], "sample_host_location_id": [], "data_size": "2.198 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7787995", "Number of Sequences": "20", "Longest Sequences (bp)": "6070096", "N50 (bp)": "6070096", "Gap Ratio (%)": "0.001284", "GCcontent (%)": "40.0", "Number of CDSs": "6462", "Average Protein Length": "344.7", "Coding Ratio (%)": "85.8", "Number of rRNAs": "10", "Number of tRNAs": "42", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Dyadobacter subterraneus", "strain": "strain=UP-52", "accession": "GCA_015221875.1", "taxid": 2773304, "species_taxid": 2773304, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2587, "total_fragments": 2588, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Dyadobacter frigoris", "strain": "strain=AR-3-8", "accession": "GCA_005280585.1", "taxid": 2576211, "species_taxid": 2576211, "relation_to_type": "type", "validated": true, "ani": 85.4852, "matched_fragments": 1865, "total_fragments": 2588, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter koreensis", "strain": "strain=DSM 19938", "accession": "GCA_900108855.1", "taxid": 408657, "species_taxid": 408657, "relation_to_type": "type", "validated": true, "ani": 81.1574, "matched_fragments": 1049, "total_fragments": 2588, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter psychrotolerans", "strain": "strain=AR-3-6", "accession": "GCA_004349265.1", "taxid": 2541721, "species_taxid": 2541721, "relation_to_type": "type", "validated": true, "ani": 78.0275, "matched_fragments": 542, "total_fragments": 2588, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter luteus", "strain": "strain=RS19", "accession": "GCA_003383615.1", "taxid": 2259619, "species_taxid": 2259619, "relation_to_type": "type", "validated": true, "ani": 77.6621, "matched_fragments": 353, "total_fragments": 2588, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter bucti", "strain": "strain=QTA69", "accession": "GCA_005869225.1", "taxid": 2572203, "species_taxid": 2572203, "relation_to_type": "type", "validated": true, "ani": 77.4906, "matched_fragments": 358, "total_fragments": 2588, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter alkalitolerans", "strain": "strain=DSM 23607", "accession": "GCA_000428845.1", "taxid": 492736, "species_taxid": 492736, "relation_to_type": "type", "validated": true, "ani": 77.4625, "matched_fragments": 350, "total_fragments": 2588, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter psychrophilus", "strain": "strain=DSM 22270", "accession": "GCA_900167945.1", "taxid": 651661, "species_taxid": 651661, "relation_to_type": "type", "validated": true, "ani": 77.4134, "matched_fragments": 368, "total_fragments": 2588, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter flavalbus", "strain": "strain=NS28", "accession": "GCA_006149045.1", "taxid": 2579942, "species_taxid": 2579942, "relation_to_type": "type", "validated": true, "ani": 77.3038, "matched_fragments": 370, "total_fragments": 2588, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter sediminis", "strain": "strain=CGMCC 1.12895", "accession": "GCA_014640015.1", "taxid": 1493691, "species_taxid": 1493691, "relation_to_type": "type", "validated": true, "ani": 77.2057, "matched_fragments": 361, "total_fragments": 2588, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter sediminis", "strain": "strain=Z12", "accession": "GCA_005860765.1", "taxid": 1493691, "species_taxid": 1493691, "relation_to_type": "type", "validated": true, "ani": 77.203, "matched_fragments": 364, "total_fragments": 2588, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter beijingensis", "strain": "strain=CGMCC 1.6375", "accession": "GCA_014645155.1", "taxid": 365489, "species_taxid": 365489, "relation_to_type": "type", "validated": true, "ani": 77.0279, "matched_fragments": 228, "total_fragments": 2588, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter beijingensis", "strain": "strain=DSM 21582", "accession": "GCA_000382205.1", "taxid": 365489, "species_taxid": 365489, "relation_to_type": "type", "validated": true, "ani": 76.953, "matched_fragments": 229, "total_fragments": 2588, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_015221875.1", "gtdb_species": "s__Dyadobacter sp015221875", "ani": 100.0, "matched_fragments": 2588, "total_fragments": 2588, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Dyadobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_005280585.1", "gtdb_species": "s__Dyadobacter frigoris", "ani": 85.4792, "matched_fragments": 1866, "total_fragments": 2588, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Dyadobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009801115.1", "gtdb_species": "s__Dyadobacter sp009801115", "ani": 84.4271, "matched_fragments": 1698, "total_fragments": 2588, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Dyadobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900108855.1", "gtdb_species": "s__Dyadobacter koreensis", "ani": 81.1692, "matched_fragments": 1046, "total_fragments": 2588, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Dyadobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004349265.1", "gtdb_species": "s__Dyadobacter psychrotolerans", "ani": 78.0333, "matched_fragments": 541, 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"coding_genes": 5709.667, "rRNA16S_genes": 4.0, "tRNA_genes": 38.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Dyadobacter", "subterraneus" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }