{ "type": "genome", "identifier": "GCF_015221995.1", "organism": "Mucilaginibacter boryungensis", "title": "Mucilaginibacter boryungensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Korean Research Institute of Bioscience and Biotechnology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_015221995.1", "bioproject": "PRJNA224116", "biosample": "SAMN16584922", "wgs_master": "JADFFM000000000.1", "refseq_category": "reference genome", "taxid": "768480", "species_taxid": "768480", "organism_name": "Mucilaginibacter boryungensis", "infraspecific_name": "strain=KCTC 23157", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/11/03", "asm_name": "ASM1522199v1", "asm_submitter": "Korean Research Institute of Bioscience and Biotechnology", "gbrs_paired_asm": "GCA_015221995.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/015/221/995/GCF_015221995.1_ASM1522199v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4882537", "genome_size_ungapped": "4882537", "gc_percent": "43.000000", "replicon_count": "0", "scaffold_count": "3", "contig_count": "3", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_015221995.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "4210", "protein_coding_gene_count": "4155", "non_coding_gene_count": "48", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-11-03", "dateModified": "2020-11-03", "datePublished": "2020-11-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Mucilaginibacter boryungensis" ], "sample_taxid": [ "768480" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "1.381 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4882537", "Number of Sequences": "3", "Longest Sequences (bp)": "3058689", "N50 (bp)": "3058689", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "43.1", "Number of CDSs": "4135", "Average Protein Length": "353.6", "Coding Ratio (%)": "89.8", "Number of rRNAs": "3", "Number of tRNAs": "41", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mucilaginibacter boryungensis", "strain": "strain=KCTC 23157", "accession": "GCA_015221995.1", "taxid": 768480, "species_taxid": 768480, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1625, "total_fragments": 1625, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Mucilaginibacter mali", "strain": "strain=G2-14", "accession": "GCA_013283875.1", "taxid": 2740462, "species_taxid": 2740462, "relation_to_type": "type", "validated": true, "ani": 79.2666, "matched_fragments": 767, "total_fragments": 1625, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter myungsuensis", "strain": "strain=KCTC 22746", "accession": "GCA_015222005.1", "taxid": 649104, "species_taxid": 649104, "relation_to_type": "type", "validated": true, "ani": 77.889, "matched_fragments": 382, "total_fragments": 1625, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter terrigena", "strain": "strain=17JY9-4", "accession": "GCA_004168255.1", "taxid": 2492395, "species_taxid": 2492395, "relation_to_type": "type", "validated": true, "ani": 77.8609, "matched_fragments": 290, "total_fragments": 1625, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter roseus", "strain": "strain=LMG 28454", "accession": "GCA_021215455.1", "taxid": 1528868, "species_taxid": 1528868, "relation_to_type": "type", "validated": true, "ani": 77.7288, "matched_fragments": 217, "total_fragments": 1625, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter pankratovii", "strain": "strain=ZT4R22", "accession": "GCA_014773265.1", "taxid": 2772110, "species_taxid": 2772110, "relation_to_type": "type", "validated": true, "ani": 77.7268, "matched_fragments": 296, "total_fragments": 1625, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter phyllosphaerae", "strain": "strain=CCM 8625", "accession": "GCA_014635525.1", "taxid": 1812349, "species_taxid": 1812349, "relation_to_type": "type", "validated": true, "ani": 77.6367, "matched_fragments": 271, "total_fragments": 1625, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter yixingensis", "strain": "strain=DSM 26809", "accession": "GCA_003050755.1", "taxid": 1295612, "species_taxid": 1295612, "relation_to_type": "type", "validated": true, "ani": 77.5924, "matched_fragments": 345, "total_fragments": 1625, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter phyllosphaerae", "strain": "strain=PP-F2FG21", "accession": "GCA_004378255.1", "taxid": 1812349, "species_taxid": 1812349, "relation_to_type": "type", "validated": true, "ani": 77.5718, "matched_fragments": 273, "total_fragments": 1625, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter pallidiroseus", "strain": "strain=dk17", "accession": "GCA_007846085.1", "taxid": 2599295, "species_taxid": 2599295, "relation_to_type": "type", "validated": true, "ani": 77.5682, "matched_fragments": 194, "total_fragments": 1625, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter gilvus", "strain": "strain=F01003", "accession": "GCA_004054195.1", "taxid": 2305909, "species_taxid": 2305909, "relation_to_type": "type", "validated": true, "ani": 77.502, "matched_fragments": 281, "total_fragments": 1625, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter pedocola", "strain": "strain=TBZ30", "accession": "GCA_002013915.1", "taxid": 1792845, "species_taxid": 1792845, "relation_to_type": "type", "validated": true, "ani": 77.4806, "matched_fragments": 285, "total_fragments": 1625, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter corticis", "strain": "strain=MAH-19", "accession": "GCA_007558865.1", "taxid": 2597670, "species_taxid": 2597670, "relation_to_type": "type", "validated": true, "ani": 77.4662, "matched_fragments": 267, "total_fragments": 1625, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter celer", "strain": "strain=HYN0043", "accession": "GCA_003576455.2", "taxid": 2305508, "species_taxid": 2305508, "relation_to_type": "type", "validated": true, "ani": 77.4375, "matched_fragments": 321, "total_fragments": 1625, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter achroorhodeus", "strain": "strain=MJ1a", "accession": "GCA_007846095.1", "taxid": 2599294, "species_taxid": 2599294, "relation_to_type": "type", "validated": true, "ani": 77.4319, "matched_fragments": 207, "total_fragments": 1625, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter conchicola", "strain": "strain=MYSH2", "accession": "GCA_003432115.1", "taxid": 2303333, "species_taxid": 2303333, "relation_to_type": "type", "validated": true, "ani": 77.3068, "matched_fragments": 265, "total_fragments": 1625, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter agri", "strain": "strain=R11", "accession": "GCA_009928685.1", "taxid": 2695265, "species_taxid": 2695265, "relation_to_type": "type", "validated": true, "ani": 77.1788, "matched_fragments": 242, "total_fragments": 1625, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter rubeus", "strain": "strain=CGMCC 1.15913", "accession": "GCA_014643835.1", "taxid": 2027860, "species_taxid": 2027860, "relation_to_type": "suspected-type", "validated": true, "ani": 77.1402, "matched_fragments": 307, "total_fragments": 1625, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter polytrichastri", "strain": "strain=RG4-7", "accession": "GCA_001911425.1", "taxid": 1302689, "species_taxid": 1302689, "relation_to_type": "type", "validated": true, "ani": 77.1084, "matched_fragments": 262, "total_fragments": 1625, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter gracilis", "strain": "strain=DSM 18602", "accession": "GCA_003633615.1", "taxid": 423350, "species_taxid": 423350, "relation_to_type": "type", "validated": true, "ani": 77.094, "matched_fragments": 257, "total_fragments": 1625, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter polytrichastri", "strain": "strain=DSM 26907", "accession": "GCA_900116355.1", "taxid": 1302689, "species_taxid": 1302689, "relation_to_type": "type", "validated": true, "ani": 77.0049, "matched_fragments": 265, "total_fragments": 1625, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_015221995.1", "gtdb_species": "s__Mucilaginibacter boryungensis", "ani": 100.0, "matched_fragments": 1625, "total_fragments": 1625, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", "ani_circumscription_radius": 95.0, 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"mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_015222005.1", "gtdb_species": "s__Mucilaginibacter myungsuensis", "ani": 77.9065, "matched_fragments": 380, "total_fragments": 1625, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004168255.1", "gtdb_species": "s__Mucilaginibacter terrigena", "ani": 77.8745, "matched_fragments": 291, "total_fragments": 1625, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001636615.1", "gtdb_species": "s__Mucilaginibacter sp001636615", "ani": 77.7489, "matched_fragments": 302, "total_fragments": 1625, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014773265.1", "gtdb_species": "s__Mucilaginibacter pankratovii", "ani": 77.7159, "matched_fragments": 297, "total_fragments": 1625, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", "ani_circumscription_radius": 95.0, 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