{
    "type": "genome",
    "identifier": "GCF_015234135.1",
    "organism": "Faecalibacter rhinopitheci",
    "title": "Faecalibacter rhinopitheci",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "YUNNAN UNIVERSITY",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_015234135.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN16434554",
        "wgs_master": "JADGIK000000000.1",
        "refseq_category": "reference genome",
        "taxid": "2779678",
        "species_taxid": "2779678",
        "organism_name": "Faecalibacter rhinopitheci",
        "infraspecific_name": "strain=WQ 117",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/11/04",
        "asm_name": "ASM1523413v1",
        "asm_submitter": "YUNNAN UNIVERSITY",
        "gbrs_paired_asm": "GCA_015234135.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/015/234/135/GCF_015234135.1_ASM1523413v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2890047",
        "genome_size_ungapped": "2890037",
        "gc_percent": "30.500000",
        "replicon_count": "0",
        "scaffold_count": "44",
        "contig_count": "44",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_015234135.1-RS_2024_10_23",
        "annotation_date": "2024-10-23",
        "total_gene_count": "2733",
        "protein_coding_gene_count": "2619",
        "non_coding_gene_count": "101",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-11-04",
    "dateModified": "2020-11-04",
    "datePublished": "2020-11-04",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Faecalibacter rhinopitheci"
        ],
        "sample_taxid": [
            "2779678"
        ],
        "sample_host_organism": [
            "Rhinopithecus bieti"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China: Yunnan Snub-nosed Monkey National Park"
        ],
        "sample_host_location_id": [],
        "data_size": "0.797 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2890047",
        "Number of Sequences": "44",
        "Longest Sequences (bp)": "592970",
        "N50 (bp)": "306342",
        "Gap Ratio (%)": "0.000346",
        "GCcontent (%)": "30.5",
        "Number of CDSs": "2636",
        "Average Protein Length": "323.0",
        "Coding Ratio (%)": "88.4",
        "Number of rRNAs": "5",
        "Number of tRNAs": "89",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Faecalibacter rhinopitheci",
                "strain": "strain=WQ 117",
                "accession": "GCA_015234135.1",
                "taxid": 2779678,
                "species_taxid": 2779678,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 939,
                "total_fragments": 940,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Faecalibacter bovis",
                "strain": "strain=ZY171143",
                "accession": "GCA_017948305.1",
                "taxid": 2898187,
                "species_taxid": 2898187,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.1188,
                "matched_fragments": 601,
                "total_fragments": 940,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Faecalibacter macacae",
                "strain": "strain=YIM 102668",
                "accession": "GCA_003687725.1",
                "taxid": 1859289,
                "species_taxid": 1859289,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.737,
                "matched_fragments": 605,
                "total_fragments": 940,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Empedobacter tilapiae",
                "strain": "strain=MRS2",
                "accession": "GCA_004785645.1",
                "taxid": 2491114,
                "species_taxid": 2491114,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.3411,
                "matched_fragments": 420,
                "total_fragments": 940,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Chishuiella changwenlii",
                "strain": "strain=DSM 27989",
                "accession": "GCA_900142565.1",
                "taxid": 1434701,
                "species_taxid": 1434701,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.1027,
                "matched_fragments": 418,
                "total_fragments": 940,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Chishuiella changwenlii",
                "strain": "strain=CGMCC 1.12707",
                "accession": "GCA_014638465.1",
                "taxid": 1434701,
                "species_taxid": 1434701,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.0349,
                "matched_fragments": 419,
                "total_fragments": 940,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Polaribacter septentrionalilitoris",
                "strain": "strain=ANORD1",
                "accession": "GCA_009832745.1",
                "taxid": 2494657,
                "species_taxid": 2494657,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.865,
                "matched_fragments": 62,
                "total_fragments": 940,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Polaribacter batillariae",
                "strain": "strain=G4M1",
                "accession": "GCA_017498485.1",
                "taxid": 2808900,
                "species_taxid": 2808900,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.8514,
                "matched_fragments": 59,
                "total_fragments": 940,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Algibacter alginicilyticus",
                "strain": "strain=HZ22",
                "accession": "GCA_001310225.1",
                "taxid": 1736674,
                "species_taxid": 1736674,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.6536,
                "matched_fragments": 55,
                "total_fragments": 940,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_015234135.1",
                "gtdb_species": "s__Faecalibacter rhinopitheci",
                "ani": 100.0,
                "matched_fragments": 939,
                "total_fragments": 940,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Faecalibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.99",
                "min_intra_species_ani": "98.99",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.97",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCA_017948305.1",
                "gtdb_species": "s__Faecalibacter bovis",
                "ani": 82.1345,
                "matched_fragments": 600,
                "total_fragments": 940,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Faecalibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.04",
                "min_intra_species_ani": "98.04",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_003687725.1",
                "gtdb_species": "s__Faecalibacter macacae",
                "ani": 81.717,
                "matched_fragments": 607,
                "total_fragments": 940,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Faecalibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900770875.1",
                "gtdb_species": "s__Faecalibacter sp900770875",
                "ani": 81.0344,
                "matched_fragments": 422,
                "total_fragments": 940,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Faecalibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002378465.1",
                "gtdb_species": "s__Empedobacter sp002378465",
                "ani": 79.538,
                "matched_fragments": 405,
                "total_fragments": 940,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Empedobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.64",
                "min_intra_species_ani": "95.90",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 24,
                "status": "-"
            },
            {
                "accession": "GCF_013116755.1",
                "gtdb_species": "s__Empedobacter stercoris",
                "ani": 79.4913,
                "matched_fragments": 374,
                "total_fragments": 940,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Empedobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.07",
                "min_intra_species_ani": "99.07",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_013488205.1",
                "gtdb_species": "s__Empedobacter falsenii_A",
                "ani": 79.3647,
                "matched_fragments": 421,
                "total_fragments": 940,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Empedobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.19",
                "min_intra_species_ani": "95.74",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 9,
                "status": "-"
            },
            {
                "accession": "GCF_900115015.1",
                "gtdb_species": "s__Algoriella xinjiangensis",
                "ani": 79.3451,
                "matched_fragments": 434,
                "total_fragments": 940,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Algoriella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.62",
                "min_intra_species_ani": "97.69",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_900142565.1",
                "gtdb_species": "s__Chishuiella changwenlii",
                "ani": 79.0914,
                "matched_fragments": 419,
                "total_fragments": 940,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chishuiella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_002484335.1",
                "gtdb_species": "s__Chishuiella sp002484335",
                "ani": 78.9353,
                "matched_fragments": 347,
                "total_fragments": 940,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chishuiella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Faecalibacter",
        "rhinopitheci"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}