{ "type": "genome", "identifier": "GCF_015234215.1", "organism": "Clostridium chrysemydis", "title": "Clostridium chrysemydis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Gateway Technical College", "publication": [ {} ], "properties": { "assembly_accession": "GCF_015234215.1", "bioproject": "PRJNA224116", "biosample": "SAMN16509476", "wgs_master": "JADEKP000000000.1", "refseq_category": "reference genome", "taxid": "2665504", "species_taxid": "2665504", "organism_name": "Clostridium chrysemydis", "infraspecific_name": "strain=PT", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/11/04", "asm_name": "ASM1523421v1", "asm_submitter": "Gateway Technical College", "gbrs_paired_asm": "GCA_015234215.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/015/234/215/GCF_015234215.1_ASM1523421v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3431939", "genome_size_ungapped": "3431939", "gc_percent": "29.000000", "replicon_count": "0", "scaffold_count": "31", "contig_count": "31", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_015234215.1-RS_2024_03_27", "annotation_date": "2024-03-27", "total_gene_count": "3454", "protein_coding_gene_count": "3302", "non_coding_gene_count": "126", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-11-04", "dateModified": "2020-11-04", "datePublished": "2020-11-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Clostridium chrysemydis" ], "sample_taxid": [ "2665504" ], "sample_host_organism": [ "Chrysemys picta" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA:Whitewater, Wisconsin" ], "sample_host_location_id": [], "data_size": "0.929 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3431939", "Number of Sequences": "31", "Longest Sequences (bp)": "1567445", "N50 (bp)": "457346", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "28.8", "Number of CDSs": "3343", "Average Protein Length": "302.5", "Coding Ratio (%)": "88.4", "Number of rRNAs": "10", "Number of tRNAs": "93", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Clostridium chrysemydis", "strain": "strain=PT", "accession": "GCA_015234215.1", "taxid": 2665504, "species_taxid": 2665504, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 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"below_threshold" }, { "organism_name": "Clostridium chauvoei", "strain": "strain=DSM 7528", "accession": "GCA_002327185.1", "taxid": 46867, "species_taxid": 46867, "relation_to_type": "type", "validated": true, "ani": 77.3293, "matched_fragments": 270, "total_fragments": 1129, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium septicum", "strain": "strain=DSM 7534", "accession": "GCA_003606265.1", "taxid": 1504, "species_taxid": 1504, "relation_to_type": "type", "validated": true, "ani": 77.3269, "matched_fragments": 249, "total_fragments": 1129, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium septicum", "strain": "strain=FDAARGOS_1551", "accession": "GCA_020736665.1", "taxid": 1504, "species_taxid": 1504, "relation_to_type": "type", "validated": true, "ani": 77.2936, "matched_fragments": 250, "total_fragments": 1129, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium gallinarum", "strain": "strain=Sa3CUN1", "accession": "GCA_014836325.1", "taxid": 2762246, "species_taxid": 2762246, "relation_to_type": "type", "validated": true, "ani": 77.2854, "matched_fragments": 224, "total_fragments": 1129, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium nigeriense", "strain": "strain=Marseille-P2414", "accession": "GCA_900086595.1", "taxid": 1805470, "species_taxid": 1805470, "relation_to_type": "type", "validated": true, "ani": 77.1876, "matched_fragments": 241, "total_fragments": 1129, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium saudiense", "strain": "strain=JCC", "accession": "GCA_000577815.1", "taxid": 1414720, "species_taxid": 1414720, "relation_to_type": "type", "validated": true, "ani": 77.1083, "matched_fragments": 202, "total_fragments": 1129, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium cibarium", "strain": "strain=Sa3CVN1", "accession": "GCA_014836335.1", "taxid": 2762247, "species_taxid": 2762247, "relation_to_type": "type", "validated": true, "ani": 77.0155, "matched_fragments": 210, "total_fragments": 1129, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium saccharobutylicum", "strain": "strain=DSM 13864", "accession": "GCA_000473995.1", "taxid": 169679, "species_taxid": 169679, "relation_to_type": "type", "validated": true, "ani": 76.9995, "matched_fragments": 218, "total_fragments": 1129, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium tertium", "strain": "strain=DSM 2485", "accession": "GCA_017873245.1", "taxid": 1559, "species_taxid": 1559, "relation_to_type": "type", "validated": true, "ani": 76.9865, "matched_fragments": 231, "total_fragments": 1129, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium saccharobutylicum", "strain": "strain=DSM 13864", "accession": "GCA_001657435.1", "taxid": 169679, 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