{
    "type": "genome",
    "identifier": "GCF_015240255.1",
    "organism": "Kordiimonas pumila",
    "title": "Kordiimonas pumila",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Zhejiang Sci-Tech University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_015240255.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN16069864",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "2161677",
        "species_taxid": "2161677",
        "organism_name": "Kordiimonas pumila",
        "infraspecific_name": "strain=N18",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/11/05",
        "asm_name": "ASM1524025v1",
        "asm_submitter": "Zhejiang Sci-Tech University",
        "gbrs_paired_asm": "GCA_015240255.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/015/240/255/GCF_015240255.1_ASM1524025v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4041658",
        "genome_size_ungapped": "4041658",
        "gc_percent": "47.500000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_015240255.1-RS_2024_10_16",
        "annotation_date": "2024-10-16",
        "total_gene_count": "3614",
        "protein_coding_gene_count": "3530",
        "non_coding_gene_count": "52",
        "pubmed_id": "29620500"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-11-05",
    "dateModified": "2020-11-05",
    "datePublished": "2020-11-05",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Kordiimonas pumila"
        ],
        "sample_taxid": [
            "2161677"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China: Zhoushan"
        ],
        "sample_host_location_id": [],
        "data_size": "1.148 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4041658",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "4041658",
        "N50 (bp)": "4041658",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "47.4",
        "Number of CDSs": "3589",
        "Average Protein Length": "341.3",
        "Coding Ratio (%)": "90.9",
        "Number of rRNAs": "6",
        "Number of tRNAs": "42",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Kordiimonas pumila",
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                "accession": "GCA_015240255.1",
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                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Kordiimonas lipolytica",
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                "accession": "GCA_001550065.1",
                "taxid": 1662421,
                "species_taxid": 1662421,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6567,
                "matched_fragments": 91,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Kordiimonas lacus",
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                "accession": "GCA_001550055.1",
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                "species_taxid": 637679,
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                "matched_fragments": 72,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Kordiimonas lacus",
                "strain": "strain=CGMCC 1.9109",
                "accession": "GCA_900101935.1",
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                "species_taxid": 637679,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9853,
                "matched_fragments": 70,
                "total_fragments": 1347,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Kordiimonas laminariae",
                "strain": "strain=5E331",
                "accession": "GCA_023008165.1",
                "taxid": 2917717,
                "species_taxid": 2917717,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9028,
                "matched_fragments": 103,
                "total_fragments": 1347,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
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                "accession": "GCF_015240255.1",
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                "matched_fragments": 1347,
                "total_fragments": 1347,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Kordiimonadaceae;g__Kordiimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_001550055.1",
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                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_016764715.1",
                "gtdb_species": "s__Kordiimonas sp016764715",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Kordiimonadaceae;g__Kordiimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002401685.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Kordiimonadaceae;g__Kordiimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017640725.1",
                "gtdb_species": "s__Kordiimonas sp017640725",
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                "total_fragments": 1347,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Kordiimonadaceae;g__Kordiimonas",
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                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_016765035.1",
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                "mean_intra_species_ani": "N/A",
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                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCA_011088215.1",
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                "ani": 76.0136,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Kordiimonadaceae;g__Kordiimonas",
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                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.316,
        "cell_length": 0.309,
        "doubling_h": null,
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        "sporulation": null,
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        "facultative_respiration": 0.0,
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        "mesophilic_range_tmp": 1.0,
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        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
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        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
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    "_genome_taxon": [
        "Kordiimonas",
        "pumila"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}