{
    "type": "genome",
    "identifier": "GCF_015265435.1",
    "organism": "Alloalcanivorax profundimaris",
    "title": "Alloalcanivorax profundimaris",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Third Institute of Oceanography, Ministry of Natural Resources, P.R.China",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_015265435.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN14884351",
        "wgs_master": "JABJWH000000000.1",
        "refseq_category": "reference genome",
        "taxid": "2735259",
        "species_taxid": "2735259",
        "organism_name": "Alloalcanivorax profundimaris",
        "infraspecific_name": "strain=ST75FaO-1",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/11/06",
        "asm_name": "ASM1526543v1",
        "asm_submitter": "Third Institute of Oceanography, Ministry of Natural Resources, P.R.China",
        "gbrs_paired_asm": "GCA_015265435.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/015/265/435/GCF_015265435.1_ASM1526543v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4036193",
        "genome_size_ungapped": "4036072",
        "gc_percent": "66.500000",
        "replicon_count": "0",
        "scaffold_count": "41",
        "contig_count": "41",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_015265435.1-RS_2024_12_09",
        "annotation_date": "2024-12-09",
        "total_gene_count": "3772",
        "protein_coding_gene_count": "3697",
        "non_coding_gene_count": "52",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-11-06",
    "dateModified": "2020-11-06",
    "datePublished": "2020-11-06",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Alloalcanivorax profundimaris"
        ],
        "sample_taxid": [
            "2735259"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China: South China Sea"
        ],
        "sample_host_location_id": [],
        "data_size": "1.108 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4036193",
        "Number of Sequences": "41",
        "Longest Sequences (bp)": "439666",
        "N50 (bp)": "280257",
        "Gap Ratio (%)": "0.002998",
        "GCcontent (%)": "66.3",
        "Number of CDSs": "3712",
        "Average Protein Length": "330.4",
        "Coding Ratio (%)": "91.2",
        "Number of rRNAs": "3",
        "Number of tRNAs": "47",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Alcanivorax profundimaris",
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                "relation_to_type": "type",
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                "status": "conclusive"
            },
            {
                "organism_name": "Alcanivorax marinus",
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                "accession": "GCA_025532125.1",
                "taxid": 1177169,
                "species_taxid": 1177169,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alcanivorax gelatiniphagus",
                "strain": "strain=MEBiC 08158",
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                "species_taxid": 1194167,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alcanivorax venustensis",
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                "accession": "GCA_015356855.1",
                "taxid": 172371,
                "species_taxid": 172371,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.68,
                "matched_fragments": 888,
                "total_fragments": 1328,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alcanivorax mobilis",
                "strain": "strain=MT13131",
                "accession": "GCA_002864685.1",
                "taxid": 2019569,
                "species_taxid": 2019569,
                "relation_to_type": "type",
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                "matched_fragments": 824,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alcanivorax dieselolei",
                "strain": "strain=CGMCC 1.3690",
                "accession": "GCA_014644575.1",
                "taxid": 285091,
                "species_taxid": 285091,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alcanivorax balearicus",
                "strain": "strain=MACL04",
                "accession": "GCA_025532145.1",
                "taxid": 413232,
                "species_taxid": 413232,
                "relation_to_type": "type",
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                "ani": 80.9061,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alcanivorax xenomutans",
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                "accession": "GCA_900217905.1",
                "taxid": 1094342,
                "species_taxid": 1094342,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alcanivorax limicola",
                "strain": "strain=JB21",
                "accession": "GCA_019931215.1",
                "taxid": 2874102,
                "species_taxid": 2874102,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0943,
                "matched_fragments": 337,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas aromaticivorans",
                "strain": "strain=MAP12",
                "accession": "GCA_019097855.1",
                "taxid": 2849492,
                "species_taxid": 2849492,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7727,
                "matched_fragments": 334,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas lalucatii",
                "strain": "strain=R1b54",
                "accession": "GCA_018398425.1",
                "taxid": 1424203,
                "species_taxid": 1424203,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6571,
                "matched_fragments": 355,
                "total_fragments": 1328,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
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        "gtdb_result": [
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                "accession": "GCF_015265435.1",
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                "matched_fragments": 1326,
                "total_fragments": 1328,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Alcanivoracaceae;g__Alcanivorax",
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            {
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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    },
    "_bac2feature": {
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        "bacillus_cell_shape": null,
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    },
    "_genome_taxon": [
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    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}