{ "type": "genome", "identifier": "GCF_015291705.1", "organism": "Bradyrhizobium arachidis", "title": "Bradyrhizobium arachidis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "China Agricultural University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_015291705.1", "bioproject": "PRJNA224116", "biosample": "SAMN03451901", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "858423", "species_taxid": "858423", "organism_name": "Bradyrhizobium arachidis", "infraspecific_name": "strain=CCBAU 051107", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/11/09", "asm_name": "ASM1529170v1", "asm_submitter": "China Agricultural University", "gbrs_paired_asm": "GCA_015291705.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/015/291/705/GCF_015291705.1_ASM1529170v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "9865973", "genome_size_ungapped": "9865973", "gc_percent": "63.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_015291705.1-RS_2024_05_26", "annotation_date": "2024-05-26", "total_gene_count": "9378", "protein_coding_gene_count": "9137", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-11-09", "dateModified": "2020-11-09", "datePublished": "2020-11-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Bradyrhizobium arachidis" ], "sample_taxid": [ "858423" ], "sample_host_organism": [ "Arachis hypogaea" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Hebei province" ], "sample_host_location_id": [], "data_size": "2.725 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "9865973", "Number of Sequences": "1", "Longest Sequences (bp)": "9865973", "N50 (bp)": "9865973", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.6", "Number of CDSs": "9416", "Average Protein Length": "292.7", "Coding Ratio (%)": "83.8", "Number of rRNAs": "3", "Number of tRNAs": "49", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Bradyrhizobium arachidis", "strain": "strain=CCBAU 051107", "accession": "GCA_015291705.1", "taxid": 858423, "species_taxid": 858423, "relation_to_type": "type", "validated": true, "ani": 100.0, 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"below_threshold" }, { "organism_name": "Bradyrhizobium sacchari", "strain": "strain=p9-20", "accession": "GCA_002068095.1", "taxid": 1399419, "species_taxid": 1399419, "relation_to_type": "type", "validated": true, "ani": 89.1441, "matched_fragments": 2200, "total_fragments": 3288, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium shewense", "strain": "strain=ERR11", "accession": "GCA_900094605.1", "taxid": 1761772, "species_taxid": 1761772, "relation_to_type": "type", "validated": true, "ani": 89.0601, "matched_fragments": 2173, "total_fragments": 3288, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium betae", "strain": "strain=CECT 5829", "accession": "GCA_024806875.1", "taxid": 244734, "species_taxid": 244734, "relation_to_type": "type", "validated": true, "ani": 88.9891, "matched_fragments": 1844, "total_fragments": 3288, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium 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"strain=CCBAU 15774", "accession": "GCA_021044685.1", "taxid": 993502, "species_taxid": 993502, "relation_to_type": "type", "validated": true, "ani": 88.2803, "matched_fragments": 2058, "total_fragments": 3288, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium manausense", "strain": "strain=BR 3351", "accession": "GCA_001440035.1", "taxid": 989370, "species_taxid": 989370, "relation_to_type": "suspected-type", "validated": true, "ani": 87.6493, "matched_fragments": 1911, "total_fragments": 3288, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium viridifuturi", "strain": "strain=SEMIA 690", "accession": "GCA_001238275.1", "taxid": 1654716, "species_taxid": 1654716, "relation_to_type": "type", "validated": true, "ani": 83.0332, "matched_fragments": 1631, "total_fragments": 3288, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium oropedii", "strain": "strain=Pear76", "accession": "GCA_020889685.1", "taxid": 1571201, "species_taxid": 1571201, "relation_to_type": "type", "validated": true, "ani": 82.9933, "matched_fragments": 1534, "total_fragments": 3288, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_015291705.1", "gtdb_species": "s__Bradyrhizobium arachidis", "ani": 100.0, "matched_fragments": 3287, "total_fragments": 3288, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Bradyrhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.87", "min_intra_species_ani": "98.47", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.88", "num_clustered_genomes": 5, "status": "conclusive" }, { "accession": "GCF_018130825.1", "gtdb_species": "s__Bradyrhizobium liaoningense_B", "ani": 90.0594, "matched_fragments": 2128, "total_fragments": 3288, 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