{ "type": "genome", "identifier": "GCF_015319165.1", "organism": "Nocardioides acrostichi", "title": "Nocardioides acrostichi", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Life sciences Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_015319165.1", "bioproject": "PRJNA224116", "biosample": "SAMN16632632", "wgs_master": "JADIVZ000000000.1", "refseq_category": "reference genome", "taxid": "2784339", "species_taxid": "2784339", "organism_name": "Nocardioides acrostichi", "infraspecific_name": "strain=CBS4Y-1", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/11/09", "asm_name": "ASM1531916v1", "asm_submitter": "Life sciences Institute", "gbrs_paired_asm": "GCA_015319165.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/015/319/165/GCF_015319165.1_ASM1531916v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4327680", "genome_size_ungapped": "4327670", "gc_percent": "71.000000", "replicon_count": "0", "scaffold_count": "32", "contig_count": "32", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_015319165.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "4115", "protein_coding_gene_count": "4023", "non_coding_gene_count": "56", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-11-09", "dateModified": "2020-11-09", "datePublished": "2020-11-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Nocardioides acrostichi" ], "sample_taxid": [ "2784339" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Guangxi" ], "sample_host_location_id": [], "data_size": "1.152 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4327680", "Number of Sequences": "32", "Longest Sequences (bp)": "1041779", "N50 (bp)": "365599", "Gap Ratio (%)": "0.000231", "GCcontent (%)": "71.1", "Number of CDSs": "4077", "Average Protein Length": "323.6", "Coding Ratio (%)": "91.5", "Number of rRNAs": "4", "Number of tRNAs": "54", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nocardioides acrostichi", "strain": "strain=CBS4Y-1", "accession": "GCA_015319165.1", "taxid": 2784339, "species_taxid": 2784339, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1426, 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"below_threshold" }, { "organism_name": "Nocardioides marinisabuli", "strain": "strain=DSM 18965", "accession": "GCA_013466785.1", "taxid": 419476, "species_taxid": 419476, "relation_to_type": "type", "validated": true, "ani": 81.4515, "matched_fragments": 781, "total_fragments": 1427, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides salarius", "strain": "strain=DSM 18239", "accession": "GCA_016907435.1", "taxid": 374513, "species_taxid": 374513, "relation_to_type": "type", "validated": true, "ani": 81.4447, "matched_fragments": 804, "total_fragments": 1427, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides deserti", "strain": "strain=CGMCC 4.7183", "accession": "GCA_014646035.1", "taxid": 1588644, "species_taxid": 1588644, "relation_to_type": "type", "validated": true, "ani": 80.5764, "matched_fragments": 702, "total_fragments": 1427, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides deserti", "strain": "strain=SC8A-24", "accession": "GCA_014266025.1", "taxid": 1588644, "species_taxid": 1588644, "relation_to_type": "type", "validated": true, "ani": 80.549, "matched_fragments": 696, "total_fragments": 1427, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides ferulae", "strain": "strain=SZ4R5S7", "accession": "GCA_003660455.1", "taxid": 2340821, "species_taxid": 2340821, "relation_to_type": "type", "validated": true, "ani": 80.3208, "matched_fragments": 706, "total_fragments": 1427, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides flavescens", "strain": "strain=YIM 123512", "accession": "GCA_009823805.1", "taxid": 2691959, "species_taxid": 2691959, "relation_to_type": "type", "validated": true, "ani": 80.1732, "matched_fragments": 695, "total_fragments": 1427, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides panaciterrulae", "strain": "strain=DSM 21350", "accession": "GCA_013409645.1", "taxid": 661492, "species_taxid": 661492, "relation_to_type": "type", "validated": true, "ani": 80.0625, "matched_fragments": 657, "total_fragments": 1427, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides soli", "strain": "strain=DSM 105498", "accession": "GCA_014191495.1", "taxid": 1036020, "species_taxid": 1036020, "relation_to_type": "type", "validated": true, "ani": 80.0364, "matched_fragments": 698, "total_fragments": 1427, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides ungokensis", "strain": "strain=LMG 28591", "accession": "GCA_013466985.1", "taxid": 1643322, "species_taxid": 1643322, "relation_to_type": "type", "validated": true, "ani": 80.0143, "matched_fragments": 646, "total_fragments": 1427, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides anomalus", "strain": "strain=HKS04", "accession": "GCA_011046535.1", "taxid": 2712223, 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