{ "type": "genome", "identifier": "GCF_015351335.1", "organism": "Corynebacterium afermentans subsp. lipophilum", "title": "Corynebacterium afermentans subsp. lipophilum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "China CDC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_015351335.1", "bioproject": "PRJNA224116", "biosample": "SAMN16604593", "wgs_master": "JADKMZ000000000.1", "refseq_category": "na", "taxid": "144184", "species_taxid": "38286", "organism_name": "Corynebacterium afermentans subsp. lipophilum", "infraspecific_name": "strain=CCUG 32105", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/11/10", "asm_name": "ASM1535133v1", "asm_submitter": "China CDC", "gbrs_paired_asm": "GCA_015351335.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/015/351/335/GCF_015351335.1_ASM1535133v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2332830", "genome_size_ungapped": "2332830", "gc_percent": "65.500000", "replicon_count": "0", "scaffold_count": "17", "contig_count": "17", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_015351335.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "2249", "protein_coding_gene_count": "2157", "non_coding_gene_count": "67", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-11-10", "dateModified": "2020-11-10", "datePublished": "2020-11-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Corynebacterium afermentans subsp. lipophilum" ], "sample_taxid": [ "144184" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "0.647 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 99.54, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2332830", "Number of Sequences": "17", "Longest Sequences (bp)": "760857", "N50 (bp)": "389800", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.3", "Number of CDSs": "2180", "Average Protein Length": "328.5", "Coding Ratio (%)": "92.1", "Number of rRNAs": "4", "Number of tRNAs": "54", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Corynebacterium afermentans subsp. lipophilum", "strain": "strain=CCUG 32105", "accession": "GCA_015351335.1", "taxid": 144184, "species_taxid": 38286, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 768, "total_fragments": 768, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Corynebacterium ihumii", "strain": "strain=GD7", "accession": "GCA_000403725.2", "taxid": 1232427, "species_taxid": 1232427, "relation_to_type": "type", "validated": true, "ani": 94.4785, "matched_fragments": 669, "total_fragments": 768, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium haemomassiliense", "strain": "strain=Marseille-Q3615", "accession": "GCA_013978595.1", "taxid": 2754726, "species_taxid": 2754726, "relation_to_type": "type", "validated": true, "ani": 92.4087, "matched_fragments": 710, "total_fragments": 768, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium fournieri", "strain": "strain=Marseille-P2948", "accession": "GCA_900176865.1", "taxid": 1852390, "species_taxid": 1852390, "relation_to_type": "type", "validated": true, "ani": 87.8242, "matched_fragments": 660, "total_fragments": 768, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium wankanglinii", "strain": "strain=zg-913", "accession": "GCA_013601005.1", "taxid": 2735136, "species_taxid": 2735136, "relation_to_type": "type", "validated": true, "ani": 86.2016, "matched_fragments": 631, "total_fragments": 768, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium ureicelerivorans", "strain": "strain=IMMIB RIV-2301", "accession": "GCA_000747315.1", "taxid": 401472, "species_taxid": 401472, "relation_to_type": "type", "validated": true, "ani": 85.6912, "matched_fragments": 602, "total_fragments": 768, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium mucifaciens", "strain": "strain=ATCC 700355", "accession": "GCA_012396315.1", "taxid": 57171, "species_taxid": 57171, "relation_to_type": "type", "validated": true, "ani": 85.19, "matched_fragments": 608, "total_fragments": 768, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium lujinxingii", "strain": "strain=zg-917", "accession": "GCA_014267325.1", "taxid": 2763010, "species_taxid": 2763010, "relation_to_type": "type", "validated": true, "ani": 84.2654, "matched_fragments": 590, "total_fragments": 768, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium lujinxingii", "strain": "strain=zg-917", "accession": "GCA_014490555.1", "taxid": 2763010, "species_taxid": 2763010, "relation_to_type": "type", "validated": true, "ani": 84.2501, "matched_fragments": 588, "total_fragments": 768, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 99.54, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_015351335.1", "gtdb_species": "s__Corynebacterium lipophilum", "ani": 100.0, "matched_fragments": 768, "total_fragments": 768, "gtdb_taxonomy": 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"d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014490555.1", "gtdb_species": "s__Corynebacterium sp014490555", "ani": 84.2375, "matched_fragments": 588, "total_fragments": 768, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "0.99", "num_clustered_genomes": 3, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.275, "cell_length": 0.068, "doubling_h": -0.089, "growth_tmp": 37.0, "optimum_tmp": 35.173, "optimum_ph": 7.292, 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