{ "type": "genome", "identifier": "GCF_015351405.1", "organism": "Corynebacterium suicordis DSM 45110", "title": "Corynebacterium suicordis DSM 45110", "description": "na", "data type": "Genome sequencing and assembly", "organization": "China CDC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_015351405.1", "bioproject": "PRJNA224116", "biosample": "SAMN16604574", "wgs_master": "JADKMY000000000.1", "refseq_category": "na", "taxid": "1121369", "species_taxid": "203264", "organism_name": "Corynebacterium suicordis DSM 45110", "infraspecific_name": "strain=DSM 45110", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/11/10", "asm_name": "ASM1535140v1", "asm_submitter": "China CDC", "gbrs_paired_asm": "GCA_015351405.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/015/351/405/GCF_015351405.1_ASM1535140v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2237085", "genome_size_ungapped": "2237085", "gc_percent": "60.000000", "replicon_count": "0", "scaffold_count": "13", "contig_count": "13", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_015351405.1-RS_2025_01_06", "annotation_date": "2025-01-06", "total_gene_count": "2059", "protein_coding_gene_count": "1993", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-11-10", "dateModified": "2020-11-10", "datePublished": "2020-11-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Corynebacterium suicordis DSM 45110" ], "sample_taxid": [ "1121369" ], "sample_host_organism": [ "pig" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "0.632 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 99.54, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2237085", "Number of Sequences": "13", "Longest Sequences (bp)": "1384510", "N50 (bp)": "1384510", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "60.2", "Number of CDSs": "2014", "Average Protein Length": "334.7", "Coding Ratio (%)": "90.4", "Number of rRNAs": "4", "Number of tRNAs": "47", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Corynebacterium suicordis", "strain": "strain=DSM 45110", "accession": "GCA_015351405.1", "taxid": 203264, "species_taxid": 203264, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 739, "total_fragments": 739, 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"below_threshold" }, { "organism_name": "Corynebacterium zhongnanshanii", "strain": "strain=zg-320", "accession": "GCA_014490575.1", "taxid": 2768834, "species_taxid": 2768834, "relation_to_type": "type", "validated": true, "ani": 78.4272, "matched_fragments": 210, "total_fragments": 739, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium jeikeium", "strain": "strain=NCTC11913", "accession": "GCA_900461185.1", "taxid": 38289, "species_taxid": 38289, "relation_to_type": "suspected-type", "validated": true, "ani": 78.4251, "matched_fragments": 235, "total_fragments": 739, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium jeikeium", "strain": "strain=ATCC 43734", "accession": "GCA_000163435.1", "taxid": 38289, "species_taxid": 38289, "relation_to_type": "suspected-type", "validated": true, "ani": 78.4185, "matched_fragments": 228, "total_fragments": 739, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium urealyticum", "strain": "strain=FDAARGOS_994", "accession": "GCA_016127975.1", "taxid": 43771, "species_taxid": 43771, "relation_to_type": "type", "validated": true, "ani": 78.2382, "matched_fragments": 196, "total_fragments": 739, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium urealyticum", "strain": "strain=NCTC12011", "accession": "GCA_900187235.1", "taxid": 43771, "species_taxid": 43771, "relation_to_type": "type", "validated": true, "ani": 78.2141, "matched_fragments": 196, "total_fragments": 739, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium resistens", "strain": "strain=DSM 45100", "accession": "GCA_000177535.2", "taxid": 258224, "species_taxid": 258224, "relation_to_type": "type", "validated": true, "ani": 78.1783, "matched_fragments": 147, "total_fragments": 739, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium 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"GCA_009734425.1", "taxid": 2675219, "species_taxid": 2675219, "relation_to_type": "type", "validated": true, "ani": 77.3372, "matched_fragments": 140, "total_fragments": 739, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium urinipleomorphum", "strain": "strain=Marseille-P2799", "accession": "GCA_900155535.1", "taxid": 1852380, "species_taxid": 1852380, "relation_to_type": "type", "validated": true, "ani": 77.3129, "matched_fragments": 89, "total_fragments": 739, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium mastitidis", "strain": "strain=DSM 44356", "accession": "GCA_000375365.1", "taxid": 161890, "species_taxid": 161890, "relation_to_type": "type", "validated": true, "ani": 77.2631, "matched_fragments": 124, "total_fragments": 739, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dietzia kunjamensis subsp. schimae", "strain": "strain=DSM 45139", "accession": "GCA_900182685.1", 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