{
    "type": "genome",
    "identifier": "GCF_015352425.1",
    "organism": "Fusibacter ferrireducens",
    "title": "Fusibacter ferrireducens",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Third Institute of Oceanography, MNR",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_015352425.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN16657610",
        "wgs_master": "JADKNH000000000.1",
        "refseq_category": "reference genome",
        "taxid": "2785058",
        "species_taxid": "2785058",
        "organism_name": "Fusibacter ferrireducens",
        "infraspecific_name": "strain=Q10-2",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/11/10",
        "asm_name": "ASM1535242v1",
        "asm_submitter": "Third Institute of Oceanography, MNR",
        "gbrs_paired_asm": "GCA_015352425.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/015/352/425/GCF_015352425.1_ASM1535242v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5280720",
        "genome_size_ungapped": "5279842",
        "gc_percent": "37.500000",
        "replicon_count": "0",
        "scaffold_count": "45",
        "contig_count": "45",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_015352425.1-RS_2024_12_09",
        "annotation_date": "2024-12-09",
        "total_gene_count": "4737",
        "protein_coding_gene_count": "4635",
        "non_coding_gene_count": "73",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-11-10",
    "dateModified": "2020-11-10",
    "datePublished": "2020-11-10",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Fusibacter ferrireducens"
        ],
        "sample_taxid": [
            "2785058"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China:Fujian"
        ],
        "sample_host_location_id": [],
        "data_size": "1.488 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5280720",
        "Number of Sequences": "45",
        "Longest Sequences (bp)": "635936",
        "N50 (bp)": "304139",
        "Gap Ratio (%)": "0.016627",
        "GCcontent (%)": "37.4",
        "Number of CDSs": "4707",
        "Average Protein Length": "326.8",
        "Coding Ratio (%)": "87.4",
        "Number of rRNAs": "3",
        "Number of tRNAs": "60",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Fusibacter ferrireducens",
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                "accession": "GCA_015352425.1",
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                "species_taxid": 2785058,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1730,
                "total_fragments": 1734,
                "ani_threshold": 95,
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            },
            {
                "organism_name": "Fusibacter tunisiensis",
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                "accession": "GCA_016908355.1",
                "taxid": 1008308,
                "species_taxid": 1008308,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6149,
                "matched_fragments": 84,
                "total_fragments": 1734,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fusibacter paucivorans",
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                "accession": "GCA_018390735.1",
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                "species_taxid": 76009,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8087,
                "matched_fragments": 88,
                "total_fragments": 1734,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_015352425.1",
                "gtdb_species": "s__Fusibacter_A sp015352425",
                "ani": 100.0,
                "matched_fragments": 1730,
                "total_fragments": 1734,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Acidaminobacteraceae;g__Fusibacter_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_001748365.1",
                "gtdb_species": "s__Fusibacter_A sp001748365",
                "ani": 81.0852,
                "matched_fragments": 887,
                "total_fragments": 1734,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Acidaminobacteraceae;g__Fusibacter_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002452745.1",
                "gtdb_species": "s__Fusibacter_A sp002452745",
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                "matched_fragments": 255,
                "total_fragments": 1734,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Acidaminobacteraceae;g__Fusibacter_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_016908355.1",
                "gtdb_species": "s__Fusibacter_C tunisiensis",
                "ani": 77.6819,
                "matched_fragments": 85,
                "total_fragments": 1734,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Acidaminobacteraceae;g__Fusibacter_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_014859095.1",
                "gtdb_species": "s__Fusibacter_C sp014859095",
                "ani": 77.2195,
                "matched_fragments": 64,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Acidaminobacteraceae;g__Fusibacter_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_001897605.1",
                "gtdb_species": "s__Fusibacter_C sp001897605",
                "ani": 76.9702,
                "matched_fragments": 85,
                "total_fragments": 1734,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Acidaminobacteraceae;g__Fusibacter_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_018390735.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Acidaminobacteraceae;g__Fusibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002441045.1",
                "gtdb_species": "s__Fusibacter_C sp002441045",
                "ani": 76.165,
                "matched_fragments": 69,
                "total_fragments": 1734,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Acidaminobacteraceae;g__Fusibacter_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016342415.1",
                "gtdb_species": "s__JABXKX01 sp016342415",
                "ani": 75.5135,
                "matched_fragments": 63,
                "total_fragments": 1734,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Acidaminobacteraceae;g__JABXKX01",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.302,
        "cell_length": 0.544,
        "doubling_h": 1.101,
        "growth_tmp": 32.333,
        "optimum_tmp": 30.0,
        "optimum_ph": 7.0,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.5,
        "aerobic_respiration": 0.5,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Fusibacter",
        "ferrireducens"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}