{ "type": "genome", "identifier": "GCF_015352455.1", "organism": "Nocardioides islandensis", "title": "Nocardioides islandensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Korean Research Institute of Bioscience and Biotechnology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_015352455.1", "bioproject": "PRJNA224116", "biosample": "SAMN16658417", "wgs_master": "JADKPN000000000.1", "refseq_category": "reference genome", "taxid": "433663", "species_taxid": "433663", "organism_name": "Nocardioides islandensis", "infraspecific_name": "strain=KCTC 19275", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/11/10", "asm_name": "ASM1535245v1", "asm_submitter": "Korean Research Institute of Bioscience and Biotechnology", "gbrs_paired_asm": "GCA_015352455.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/015/352/455/GCF_015352455.1_ASM1535245v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4963866", "genome_size_ungapped": "4963866", "gc_percent": "71.500000", "replicon_count": "0", "scaffold_count": "34", "contig_count": "34", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_015352455.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "4763", "protein_coding_gene_count": "4689", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-11-10", "dateModified": "2020-11-10", "datePublished": "2020-11-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Nocardioides islandensis" ], "sample_taxid": [ "433663" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea:Bigeum island" ], "sample_host_location_id": [], "data_size": "1.316 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4963866", "Number of Sequences": "34", "Longest Sequences (bp)": "1109403", "N50 (bp)": "237963", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "71.7", "Number of CDSs": "4742", "Average Protein Length": "325.9", "Coding Ratio (%)": "93.4", "Number of rRNAs": "4", "Number of tRNAs": "55", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nocardioides islandensis", "strain": "strain=KCTC 19275", "accession": "GCA_015352455.1", "taxid": 433663, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides ferulae", "strain": "strain=SZ4R5S7", "accession": "GCA_003660455.1", "taxid": 2340821, "species_taxid": 2340821, "relation_to_type": "type", "validated": true, "ani": 80.2924, "matched_fragments": 715, "total_fragments": 1636, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides okcheonensis", "strain": "strain=MMS20-HV4-12", "accession": "GCA_020991065.1", "taxid": 2894081, "species_taxid": 2894081, "relation_to_type": "type", "validated": true, "ani": 80.2278, "matched_fragments": 741, "total_fragments": 1636, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides baculatus", "strain": "strain=G10", "accession": "GCA_016735675.1", "taxid": 2801337, "species_taxid": 2801337, "relation_to_type": "type", "validated": true, "ani": 80.1454, "matched_fragments": 732, "total_fragments": 1636, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides lacusdianchii", "strain": "strain=JXJ CY 38", "accession": "GCA_020102855.1", "taxid": 2783664, "species_taxid": 2783664, "relation_to_type": "type", "validated": true, "ani": 80.0836, "matched_fragments": 698, "total_fragments": 1636, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides hwasunensis", "strain": "strain=19197", "accession": "GCA_014779665.1", "taxid": 397258, "species_taxid": 397258, "relation_to_type": "type", "validated": true, "ani": 80.0424, "matched_fragments": 703, "total_fragments": 1636, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides furvisabuli", "strain": "strain=JCM 13813", "accession": "GCA_021083185.1", "taxid": 375542, "species_taxid": 375542, "relation_to_type": "type", "validated": true, "ani": 80.0228, "matched_fragments": 658, "total_fragments": 1636, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides coralli", 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