{ "type": "genome", "identifier": "GCF_015352975.1", "organism": "Aestuariimicrobium ganziense", "title": "Aestuariimicrobium ganziense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Yunnan University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_015352975.1", "bioproject": "PRJNA224116", "biosample": "SAMN16229861", "wgs_master": "JACYIZ000000000.1", "refseq_category": "reference genome", "taxid": "2773677", "species_taxid": "2773677", "organism_name": "Aestuariimicrobium ganziense", "infraspecific_name": "strain=YIM S02566", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/11/10", "asm_name": "ASM1535297v1", "asm_submitter": "Yunnan University", "gbrs_paired_asm": "GCA_015352975.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/015/352/975/GCF_015352975.1_ASM1535297v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3150316", "genome_size_ungapped": "3149864", "gc_percent": "69.000000", "replicon_count": "0", "scaffold_count": "66", "contig_count": "66", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_015352975.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "3086", "protein_coding_gene_count": "2968", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-11-10", "dateModified": "2020-11-10", "datePublished": "2020-11-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Aestuariimicrobium ganziense" ], "sample_taxid": [ "2773677" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Sichuan" ], "sample_host_location_id": [], "data_size": "0.847 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3150316", "Number of Sequences": "66", "Longest Sequences (bp)": "747499", "N50 (bp)": "449246", "Gap Ratio (%)": "0.014951", "GCcontent (%)": "68.8", "Number of CDSs": "3061", "Average Protein Length": "313.9", "Coding Ratio (%)": "91.5", "Number of rRNAs": "3", "Number of tRNAs": "53", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Aestuariimicrobium ganziense", "strain": "strain=YIM S02566", "accession": "GCA_015352975.1", "taxid": 2773677, "species_taxid": 2773677, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1033, "total_fragments": 1034, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Aestuariimicrobium kwangyangense", "strain": "strain=DSM 21549", "accession": "GCA_000421525.1", "taxid": 396389, "species_taxid": 396389, "relation_to_type": "type", "validated": true, "ani": 79.7596, "matched_fragments": 468, "total_fragments": 1034, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Propioniciclava sinopodophylli", "strain": "strain=KCTC 33808", "accession": "GCA_004324755.1", "taxid": 1837344, "species_taxid": 1837344, "relation_to_type": "type", "validated": true, "ani": 79.1793, "matched_fragments": 342, "total_fragments": 1034, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Propioniciclava coleopterorum", "strain": "strain=HDW11", "accession": "GCA_011393335.1", "taxid": 2714937, "species_taxid": 2714937, "relation_to_type": "type", "validated": true, "ani": 78.7436, "matched_fragments": 348, "total_fragments": 1034, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteococcus japonicus", "strain": "strain=DSM 10546", "accession": "GCA_003752415.1", "taxid": 33984, "species_taxid": 33984, "relation_to_type": "type", "validated": true, "ani": 78.6774, "matched_fragments": 354, "total_fragments": 1034, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Propioniciclava soli", "strain": "strain=YIM S02567", "accession": "GCA_014858005.1", "taxid": 2775081, "species_taxid": 2775081, "relation_to_type": "type", "validated": true, "ani": 78.6298, "matched_fragments": 314, "total_fragments": 1034, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tessaracoccus flavescens", "strain": "strain=SST-39T", "accession": "GCA_001998865.1", "taxid": 399497, "species_taxid": 399497, "relation_to_type": "type", "validated": true, "ani": 78.5744, "matched_fragments": 302, "total_fragments": 1034, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desertihabitans aurantiacus", "strain": "strain=CPCC 204711", "accession": "GCA_003344635.1", "taxid": 2282477, "species_taxid": 2282477, "relation_to_type": "type", "validated": true, "ani": 78.4743, "matched_fragments": 349, "total_fragments": 1034, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desertihabitans brevis", "strain": "strain=16Sb5-5", "accession": "GCA_003327535.1", "taxid": 2268447, "species_taxid": 2268447, "relation_to_type": "type", "validated": true, "ani": 78.4696, "matched_fragments": 390, "total_fragments": 1034, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tessaracoccus rhinocerotis", "strain": "strain=YIM 101269", "accession": "GCA_007197885.1", "taxid": 1689449, "species_taxid": 1689449, "relation_to_type": "type", "validated": true, "ani": 78.462, "matched_fragments": 276, "total_fragments": 1034, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Auraticoccus 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"accession": "GCA_900182665.1", "taxid": 433330, "species_taxid": 433330, "relation_to_type": "type", "validated": true, "ani": 77.9279, "matched_fragments": 238, "total_fragments": 1034, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Propioniciclava tarda", "strain": "strain=DSM 22130", "accession": "GCA_004324765.1", "taxid": 433330, "species_taxid": 433330, "relation_to_type": "type", "validated": true, "ani": 77.8741, "matched_fragments": 239, "total_fragments": 1034, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microlunatus antarcticus", "strain": "strain=DSM 11053", "accession": "GCA_014193425.1", "taxid": 53388, "species_taxid": 53388, "relation_to_type": "type", "validated": true, "ani": 77.7504, "matched_fragments": 279, "total_fragments": 1034, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Naumannella halotolerans", "strain": "strain=DSM 24323", "accession": "GCA_004364645.1", "taxid": 993414, "species_taxid": 993414, "relation_to_type": "type", "validated": true, "ani": 77.7159, "matched_fragments": 224, "total_fragments": 1034, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Propionibacterium freudenreichii subsp. freudenreichii", "strain": "strain=DSM 20271", "accession": "GCA_000940845.1", "taxid": 66712, "species_taxid": 1744, "relation_to_type": "type", "validated": true, "ani": 77.7133, "matched_fragments": 193, "total_fragments": 1034, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Propionibacterium australiense", "strain": "strain=NML98A072", "accession": "GCA_003666605.1", "taxid": 119981, "species_taxid": 119981, "relation_to_type": "type", "validated": true, "ani": 77.706, "matched_fragments": 218, "total_fragments": 1034, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides lacusdianchii", "strain": "strain=JXJ CY 38", "accession": "GCA_020102855.1", "taxid": 2783664, 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