# locus_id	locus_tag	location	classification	internal_stop	indel	ref_id	description	query_cov	ref_cov	identity
MGA_61	LOCUS_00600	sequence1:62087..62656(-)	partial			WP_002261916.1	helix-hairpin-helix domain-containing protein	67.7	53.8	40.2
MGA_74	LOCUS_00730	sequence1:72893..73093(-)	frameshift		72910	WP_005694465.1	thiamine-phosphate kinase	97.0	19.2	75.0
MGA_78	LOCUS_00770	sequence1:74685..75536(-)	partial			WP_013384246.1	FkbM family methyltransferase	71.7	72.8	24.8
MGA_120	LOCUS_01190	sequence1:115845..116576(+)	partial			WP_000993735.1	phage antirepressor Ant	49.0	54.1	42.7
MGA_145	LOCUS_01440	sequence1:137029..137469(+)	partial			WP_014207652.1	ester cyclase	84.2	72.6	53.7
MGA_148	LOCUS_01470	sequence1:139583..142366(-)	partial			WP_005171070.1	DNA translocase FtsK	65.6	50.0	54.7
MGA_154	LOCUS_01530	sequence1:153313..153729(+)	partial			WP_004199699.1	trimeric autotransporter adhesin BpaE	100.0	17.3	38.7
MGA_213	LOCUS_02120	sequence1:220680..221252(-)	frameshift		220694	WP_114935545.1	CRISPR-associated protein Cas4	86.8	76.4	82.4
MGA_287	LOCUS_02860	sequence1:294933..295520(-)	partial			WP_000142493.1	site-specific integrase	87.2	55.5	40.9
MGA_324	LOCUS_03230	sequence1:322308..322619(-)	partial			WP_007372612.1	RAQPRD family integrative conjugative element protein	76.7	73.3	43.0
MGA_331	LOCUS_03300	sequence1:329429..330436(-)	partial			WP_011392591.1	AAA family ATPase	53.7	35.6	27.7
MGA_334	LOCUS_03330	sequence1:332057..332743(-)	partial			WP_011817108.1	TcpQ domain-containing protein	67.1	42.9	41.2
MGA_340	LOCUS_03390	sequence1:334883..335317(-)	partial			WP_000108396.1	STY4534 family ICE replication protein	91.0	72.7	43.9
MGA_352	LOCUS_03510	sequence1:343969..344466(-)	partial			WP_005895541.1	DUF3158 family protein	47.3	40.2	34.6
MGA_356	LOCUS_03550	sequence1:348626..350383(-)	partial			WP_000202097.1	ParB family protein	74.0	76.8	34.9
MGA_369	LOCUS_03680	sequence1:366023..366472(-)	partial			WP_015923284.1	TPM domain-containing protein	73.8	48.0	29.1
MGA_474	LOCUS_04720	sequence1:483108..488741(-)	partial			WP_013399748.1	Rib/alpha-like domain-containing protein	24.6	14.5	30.8
MGA_475	LOCUS_04730	sequence1:488760..489635(-)	partial			WP_004184872.1	outer membrane protein assembly factor BamE	43.0	46.4	35.9
MGA_476	LOCUS_04740	sequence1:490277..490663(-)	partial			WP_005462646.1	isoprenylcysteine carboxylmethyltransferase family protein	83.6	69.9	43.9
MGA_490	LOCUS_04880	sequence1:509091..509540(-)	internal_stop_codon	509091..509093(-),509625..509627(-)		WP_005650376.1	D-hexose-6-phosphate mutarotase	99.3	53.7	59.5
MGA_491	LOCUS_04890	sequence1:509625..509861(-)	internal_stop_codon	509625..509627(-)		WP_005650376.1	D-hexose-6-phosphate mutarotase	91.0	26.3	69.0
MGA_497	LOCUS_04950	sequence1:515928..516203(-)	partial			WP_002209570.1	transcriptional regulator UhpA	82.4	38.3	69.3
MGA_540	LOCUS_05380	sequence1:547886..550210(+)	partial			WP_013097404.1	replication endonuclease	66.9	77.0	35.2
MGA_560	LOCUS_05580	sequence1:563317..565431(+)	partial			WP_011792272.1	phage tail tape measure protein	61.6	74.2	30.9
MGA_624	LOCUS_06200	sequence1:645114..645989(-)	partial			WP_004184872.1	outer membrane protein assembly factor BamE	43.0	46.4	35.9
MGA_638	LOCUS_06340	sequence1:663252..664412(+)	partial			WP_000793731.1	metallophosphoesterase	64.0	68.2	39.8
MGA_639	LOCUS_06350	sequence1:664552..664770(+)	frameshift		664722,664930	WP_002216735.1	phosphoethanolamine--lipid A transferase	75.0	9.0	57.4
MGA_640	LOCUS_06360	sequence1:664879..665193(+)	frameshift		664722,665179,664933	WP_002216735.1	phosphoethanolamine--lipid A transferase	78.8	14.9	51.2
MGA_641	LOCUS_06370	sequence1:665180..665947(+)	frameshift		665179,664933	WP_002216735.1	phosphoethanolamine--lipid A transferase	69.0	32.2	65.3
MGA_662	LOCUS_06580	sequence1:685392..686588(-)	partial			WP_013382865.1	rhamnan synthesis F family protein	43.2	46.6	31.4
MGA_664	LOCUS_06600	sequence1:687330..688118(-)	partial			WP_012257609.1	ABC transporter permease	95.0	42.0	34.4
MGA_697	LOCUS_06930	sequence1:717551..719713(+)	partial			WP_005648342.1	transglycosylase SLT domain-containing protein	64.4	73.5	60.8
MGA_723	LOCUS_07190	sequence1:745397..745798(-)	partial			WP_005812538.1	YbaN family protein	65.4	66.9	49.4
MGA_726	LOCUS_07220	sequence1:748501..750855(-)	partial			WP_002247616.1	hemagglutinin repeat-containing protein	48.0	14.4	50.7
MGA_728	LOCUS_07240	sequence1:751130..751477(-)	partial			WP_002225626.1	hypothetical protein	73.9	19.9	34.1
MGA_732	LOCUS_07280	sequence1:752637..754862(-)	partial			WP_002247616.1	hemagglutinin repeat-containing protein	66.0	18.7	49.1
MGA_734	LOCUS_07300	sequence1:755226..759074(-)	partial			WP_002222440.1	hemagglutinin repeat-containing protein	98.4	56.7	41.1
MGA_737	LOCUS_07330	sequence1:759583..768852(-)	partial			WP_002247616.1	hemagglutinin repeat-containing protein	63.9	76.3	34.9
MGA_741	LOCUS_07370	sequence1:774535..786732(-)	partial			WP_158580290.1	YadA-like family protein	64.6	47.9	24.2
MGA_745	LOCUS_07410	sequence1:793230..793427(+)	frameshift		793391	WP_003721901.1	mannose/fructose/sorbose PTS transporter subunit IIA	73.8	33.3	43.8
MGA_746	LOCUS_07420	sequence1:793391..794224(+)	frameshift		793388	WP_002211069.1	PTS mannose transporter subunit IIAB	92.8	77.8	45.5
MGA_767	LOCUS_07610	sequence1:825364..826398(+)	frameshift		826395	WP_005694289.1	NCS2 family protein	95.3	79.2	88.4
MGA_835	LOCUS_08290	sequence1:899174..899431(+)	frameshift		899465,899341,899559	WP_005814554.1	DUF1848 domain-containing protein	71.8	19.4	62.3
MGA_889	LOCUS_08830	sequence1:952687..952980(-)	frameshift		952945	WP_111723549.1	IS3 family transposase	85.6	18.1	55.4
MGA_890	LOCUS_08840	sequence1:952931..953515(-)	frameshift		953571,952935	WP_149032136.1	IS3-like element ISPsy8 family transposase	91.8	41.8	39.9
MGA_891	LOCUS_08850	sequence1:953515..953862(-)	partial			WP_000033204.1	helix-turn-helix domain-containing protein	96.5	66.3	30.2
MGA_904	LOCUS_08980	sequence1:964051..968703(+)	partial			WP_037394620.1	M10 family metallopeptidase C-terminal domain-containing protein	27.9	78.4	31.4
MGA_909	LOCUS_09030	sequence1:973435..973761(-)	frameshift		973822	WP_011035718.1	virulence RhuM family protein	98.1	31.5	72.6
MGA_910	LOCUS_09040	sequence1:973799..974011(-)	frameshift		973822	WP_011035718.1	virulence RhuM family protein	80.0	16.7	53.6
MGA_913	LOCUS_09070	sequence1:976044..976595(-)	frameshift		976690	WP_000229101.1	DEAD/DEAH box helicase family protein	57.9	12.9	50.0
MGA_916	LOCUS_09100	sequence1:977362..978258(-)	frameshift		978260	WP_016255537.1	ATP-binding domain-containing protein	63.8	27.1	34.8
MGA_917	LOCUS_09110	sequence1:978183..979139(-)	frameshift		978260	WP_016255537.1	ATP-binding domain-containing protein	91.5	42.9	43.5
MGA_929	LOCUS_09230	sequence1:997144..1001760(+)	partial			WP_129559156.1	LPXTG-anchored neuraminidase NanA	48.8	75.2	34.0
MGA_931	LOCUS_09250	sequence1:1002776..1003285(-)	partial			WP_004523466.1	porin	94.7	46.3	27.2
MGA_936	LOCUS_09300	sequence1:1008416..1008994(+)	partial			WP_075985436.1	glycosyltransferase family 25 protein	100.0	69.4	72.5
MGA_937	LOCUS_09310	sequence1:1009081..1009428(+)	partial			WP_000033204.1	helix-turn-helix domain-containing protein	96.5	66.3	30.2
MGA_938	LOCUS_09320	sequence1:1009428..1010012(+)	frameshift		1009371,1010007	WP_149032136.1	IS3-like element ISPsy8 family transposase	91.8	41.8	39.9
MGA_939	LOCUS_09330	sequence1:1009963..1010256(+)	frameshift		1009997	WP_111723549.1	IS3 family transposase	85.6	18.1	55.4
MGA_1031	LOCUS_10250	sequence1:1101292..1101681(+)	frameshift		1101678	WP_005694149.1	transposase	59.7	42.8	46.8
MGA_1032	LOCUS_10260	sequence1:1101885..1102607(+)	partial			WP_011948245.1	ABC transporter ATP-binding protein	91.2	71.0	41.9
MGA_1035	LOCUS_10290	sequence1:1104129..1105088(+)	partial			WP_011815696.1	beta-ketoacyl-[acyl-carrier-protein] synthase family protein	53.3	46.5	28.6
MGA_1037	LOCUS_10310	sequence1:1105726..1107417(+)	frameshift		1107408	WP_011031131.1	excinuclease ABC subunit UvrA	98.8	73.5	49.2
MGA_1038	LOCUS_10320	sequence1:1107443..1107997(+)	frameshift		1107411	WP_010964773.1	excinuclease ABC subunit UvrA	96.2	23.4	54.2
MGA_1046	LOCUS_10400	sequence1:1112551..1113105(+)	partial			WP_180320626.1	hypothetical protein	74.5	83.1	52.9
MGA_1047	LOCUS_10410	sequence1:1113253..1114551(+)	partial			WP_005765442.1	acyl-CoA synthetase family protein	96.5	74.8	34.4
MGA_1048	LOCUS_10420	sequence1:1114564..1115289(+)	frameshift		1115271	WP_164925926.1	glycosyltransferase family 2 protein	94.2	38.0	51.1
MGA_1054	LOCUS_10480	sequence1:1120675..1124148(+)	partial			WP_052728129.1	YadA-like family protein	94.6	57.8	28.5
MGA_1055	LOCUS_10490	sequence1:1124386..1125624(+)	partial			WP_002222588.1	autotransporter adhesin NhhA	100.0	61.6	27.8
MGA_1070	LOCUS_10640	sequence1:1140425..1140841(+)	partial			WP_000834704.1	phosphate-starvation-inducible protein PsiE	70.3	72.4	54.6
MGA_1090	LOCUS_10840	sequence1:1158916..1159578(-)	partial			WP_002210743.1	CDF family zinc transporter ZitB	78.6	59.6	40.9
MGA_1093	LOCUS_10870	sequence1:1160764..1165254(+)	partial			WP_029495085.1	autotransporter outer membrane beta-barrel domain-containing protein	29.9	29.4	34.2
MGA_1109	LOCUS_11020	sequence1:1186046..1186948(-)	partial			WP_008765864.1	DUF3298 and DUF4163 domain-containing protein	40.3	44.9	30.7
MGA_1160	LOCUS_11530	sequence1:1242797..1243465(-)	partial			WP_038966240.1	MOSC and FAD-binding oxidoreductase domain-containing protein	95.9	36.2	33.0
MGA_1165	LOCUS_11580	sequence1:1247656..1247898(-)	partial			WP_005651074.1	fluoride efflux transporter CrcB	95.0	59.4	50.0
MGA_1176	LOCUS_11690	sequence1:1259302..1259799(-)	partial			WP_006995131.1	ComF family protein	100.0	72.8	69.9
MGA_1238	LOCUS_12280	sequence1:1325260..1325892(-)	partial			WP_010908846.1	class I SAM-dependent methyltransferase	76.2	47.0	34.9
MGA_1246	LOCUS_12360	sequence1:1333412..1333738(-)	partial			WP_032472658.1	helix-turn-helix transcriptional regulator	97.2	67.7	45.7
MGA_1250	LOCUS_12400	sequence1:1337836..1338846(+)	partial			WP_028730510.1	FRG domain-containing protein	99.1	54.7	34.1
MGA_1282	LOCUS_12720	sequence1:1377875..1387291(+)	partial			WP_133116924.1	YadA-like family protein	40.1	79.6	24.6
MGA_1283	LOCUS_12730	sequence1:1387634..1387933(-)	partial			WP_002208949.1	HlyD family secretion protein	97.0	22.3	35.4
MGA_1297	LOCUS_12870	sequence1:1403837..1415620(+)	partial			WP_014206787.1	hemagglutinin repeat-containing protein	43.2	40.5	30.7
MGA_1299	LOCUS_12890	sequence1:1415873..1418833(+)	partial			WP_014206787.1	hemagglutinin repeat-containing protein	70.3	16.4	29.6
MGA_1303	LOCUS_12930	sequence1:1421391..1421915(+)	partial			WP_210043352.1	deaminase domain-containing protein	88.5	3.0	45.5
MGA_1306	LOCUS_12960	sequence1:1422440..1424680(-)	partial			WP_010930159.1	pertactin autotransporter	64.1	52.2	29.7
MGA_1353	LOCUS_13430	sequence1:1482000..1482806(+)	partial			WP_000970524.1	glycosyltransferase	39.2	32.2	38.3
MGA_1356	LOCUS_13460	sequence1:1484754..1486292(-)	partial			WP_010942194.1	tetratricopeptide repeat protein	53.1	59.0	32.6
MGA_1360	LOCUS_13500	sequence1:1489389..1490354(+)	frameshift		1490339	WP_014206489.1	MFS transporter	96.9	78.7	24.3
MGA_1361	LOCUS_13510	sequence1:1490672..1491280(-)	partial			WP_005694583.1	peptidylprolyl isomerase	73.3	77.9	89.2
MGA_1386	LOCUS_13760	sequence1:1515256..1515648(+)	frameshift,internal_stop_codon	1515605..1515607(+),1515617..1515619(+)	1515588,1515621	WP_001217684.1	ribose ABC transporter ATP-binding protein RbsA	77.7	20.4	55.4
MGA_1387	LOCUS_13770	sequence1:1515713..1516750(+)	frameshift		1515642	WP_011254479.1	sugar ABC transporter ATP-binding protein	99.7	69.9	45.5
MGA_1390	LOCUS_13800	sequence1:1519396..1519620(+)	internal_stop_codon	1519618..1519620(+)		WP_002208770.1	DNA-binding transcriptional repressor DeoR	100.0	29.1	43.2
MGA_1401	LOCUS_13910	sequence1:1530908..1531126(-)	partial			WP_006995396.1	ACT domain-containing protein	84.7	27.5	72.1
MGA_1405	LOCUS_13950	sequence1:1535527..1535733(+)	internal_stop_codon	1535731..1535733(+)		WP_002210682.1	phosphomethylpyrimidine synthase ThiC	100.0	11.7	75.0
MGA_1535	LOCUS_15230	sequence1:1669814..1670068(-)	frameshift,internal_stop_codon	1670346..1670348(-)	1670028	WP_111723549.1	IS3 family transposase	88.1	16.7	59.5
MGA_1542	LOCUS_15300	sequence1:1674455..1674625(+)	frameshift,internal_stop_codon	1674283..1674285(+)	1674468	WP_011707882.1	glycosyltransferase family 25 protein	64.3	16.3	61.1
MGA_1582	LOCUS_15700	sequence1:1713194..1719577(+)	partial			WP_167127769.1	Calx-beta domain-containing protein	18.5	14.3	25.9
MGA_1588	LOCUS_15760	sequence1:1725267..1725563(-)	frameshift		1725664	WP_000536391.1	maltose O-acetyltransferase	99.0	53.0	63.9
MGA_1591	LOCUS_15790	sequence1:1726830..1727885(-)	partial			WP_010884002.1	alpha/beta hydrolase fold domain-containing protein	78.1	32.9	35.4
MGA_1593	LOCUS_15810	sequence1:1728680..1729132(+)	partial			WP_004193539.1	helix-turn-helix domain-containing protein	71.3	67.7	37.4
MGA_1594	LOCUS_15820	sequence1:1729253..1729726(+)	partial			WP_011948432.1	excinuclease ABC subunit UvrA	81.5	17.2	50.0
MGA_1595	LOCUS_15830	sequence1:1729699..1730022(+)	partial			WP_011987096.1	excinuclease ABC subunit UvrA	98.1	14.0	47.6
MGA_1597	LOCUS_15850	sequence1:1731073..1731684(-)	partial			WP_011183217.1	TIR domain-containing protein	58.1	63.2	41.5
MGA_1600	LOCUS_15880	sequence1:1734467..1734778(-)	frameshift		1734780,1734486	WP_003114403.1	RhuM family protein	93.2	54.9	74.0
MGA_1601	LOCUS_15890	sequence1:1734769..1735422(-)	frameshift		1734780,1734486	WP_011202293.1	virulence RhuM family protein	98.2	59.4	60.9
MGA_1612	LOCUS_16000	sequence1:1744993..1745256(+)	partial			WP_015909376.1	LysR family transcriptional regulator	70.1	20.8	45.9
MGA_1613	LOCUS_16010	sequence1:1745374..1745850(+)	frameshift		1745388,1745253	WP_003812099.1	LysR family transcriptional regulator	93.7	50.0	25.3
MGA_1619	LOCUS_16070	sequence1:1751464..1751730(-)	partial			WP_011962808.1	nucleotidyltransferase substrate binding protein	96.6	63.2	46.6
MGA_1738	LOCUS_17260	sequence1:1892518..1892865(+)	partial			WP_000033204.1	helix-turn-helix domain-containing protein	96.5	66.3	30.2
MGA_1739	LOCUS_17270	sequence1:1892865..1893449(+)	frameshift,internal_stop_codon	1893448..1893450(+)	1892832,1893474	WP_223216515.1	IS3 family transposase	87.1	38.2	40.8
MGA_1740	LOCUS_17280	sequence1:1893400..1893693(+)	frameshift		1893434	WP_111723549.1	IS3 family transposase	85.6	18.1	55.4
MGA_1779	LOCUS_17670	sequence1:1934140..1934361(-)	frameshift		1934467	WP_010971962.1	DUF817 domain-containing protein	95.9	24.1	68.6
MGA_1780	LOCUS_17680	sequence1:1934447..1934977(-)	frameshift		1934467	WP_010971962.1	DUF817 domain-containing protein	94.9	57.9	64.9
MGA_1786	LOCUS_17740	sequence1:1939843..1940121(-)	partial			WP_011101979.1	subtype B tannase	96.7	20.0	40.4
MGA_1787	LOCUS_17750	sequence1:1940081..1940776(-)	partial			WP_005898589.1	subtype B tannase	75.3	34.2	59.4
MGA_1795	LOCUS_17830	sequence1:1946252..1946614(+)	partial			WP_010921197.1	helix-turn-helix domain-containing protein	85.8	69.6	63.1
MGA_1816	LOCUS_18040	sequence1:1967208..1968305(+)	partial			WP_005693785.1	cell envelope integrity protein TolA	38.9	38.2	71.1
MGA_1830	LOCUS_18170	sequence1:1985230..1985568(+)	partial			WP_111723554.1	IS3-like element ISHin1 family transposase	100.0	25.1	64.3
MGA_1839	LOCUS_18260	sequence1:1995333..1995944(-)	partial			WP_133116924.1	YadA-like family protein	88.7	11.4	44.4
MGA_1916	LOCUS_19030	sequence1:2061547..2062407(+)	partial			WP_000431318.1	replication protein	71.3	74.6	30.4
MGA_1917	LOCUS_19040	sequence1:2062407..2062745(+)	partial			WP_032828363.1	replicative DNA helicase	82.1	19.2	50.0
MGA_1918	LOCUS_19050	sequence1:2062784..2063839(+)	frameshift		2062691	WP_000131484.1	DnaB-like helicase C-terminal domain-containing protein	98.0	72.6	50.1
MGA_1932	LOCUS_19190	sequence1:2071587..2071775(+)	frameshift		2071760	WP_000200769.1	PBSX family phage terminase large subunit	80.6	10.6	82.0
MGA_1933	LOCUS_19200	sequence1:2071772..2072938(+)	frameshift		2071760	WP_006996384.1	PBSX family phage terminase large subunit	96.4	83.4	66.8
MGA_1951	LOCUS_19380	sequence1:2083388..2086729(+)	partial			WP_010951073.1	tape measure protein	23.6	26.0	48.3
MGA_1957	LOCUS_19440	sequence1:2089393..2090073(+)	partial			WP_001061379.1	KilA-N domain-containing protein	50.9	43.1	40.8
MGA_1958	LOCUS_19450	sequence1:2090199..2090720(+)	partial			WP_000204917.1	phage antirepressor Ant	87.3	49.5	36.5
MGA_1961	LOCUS_19480	sequence1:2092120..2093226(+)	frameshift		2093154	WP_000515639.1	host specificity protein J	94.0	30.4	50.8
MGA_1962	LOCUS_19490	sequence1:2093177..2095942(+)	frameshift		2093157	WP_000515426.1	host specificity protein J	59.4	55.5	30.4
MGA_2077	LOCUS_20630	sequence1:2228134..2228982(-)	frameshift		2229157	WP_111697003.1	peptide chain release factor 2	100.0	77.3	92.6
MGA_2180	LOCUS_21660	sequence1:2343505..2343786(-)	partial			WP_005083398.1	alpha/beta hydrolase	87.1	36.5	33.3
MGA_2201	LOCUS_21870	sequence1:2364822..2364986(-)	partial			WP_005694149.1	transposase	70.4	21.1	57.9
MGA_2224	LOCUS_22100	sequence1:2393265..2393981(-)	partial			WP_013096000.1	glycosyltransferase family 2 protein	97.5	73.5	56.7
MGA_2231	LOCUS_22170	sequence1:2402324..2404654(+)	frameshift		2404630	WP_012583655.1	DEAD/DEAH box helicase family protein	98.1	68.1	35.8
MGA_2232	LOCUS_22180	sequence1:2404651..2405616(+)	frameshift		2404633	WP_012583655.1	DEAD/DEAH box helicase family protein	99.7	30.0	27.1
MGA_2248	LOCUS_22340	sequence1:2422121..2422312(-)	frameshift		2422280,2422319	WP_000190927.1	tetrathionate respiration response regulator TtrR	82.5	25.2	50.0
MGA_2253	LOCUS_22390	sequence1:2427307..2427783(-)	internal_stop_codon	2427895..2427897(-)		WP_000267456.1	fructosamine kinase family protein	99.4	54.2	49.0
MGA_2254	LOCUS_22400	sequence1:2427895..2428170(-)	internal_stop_codon	2427895..2427897(-)		WP_015705109.1	fructosamine kinase family protein	100.0	31.8	38.5
MGA_2283	LOCUS_22690	sequence1:2465403..2465609(-)	frameshift		2465795,2465747,2465722,2465468,2465423	WP_111697003.1	peptide chain release factor 2	72.1	13.4	73.5
MGA_2284	LOCUS_22700	sequence1:2466123..2466371(+)	partial			WP_005455502.1	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	81.7	16.2	52.2
MGA_2306	LOCUS_22920	sequence1:2488388..2488615(+)	frameshift,internal_stop_codon	2488341..2488343(+)	2488388	WP_005694308.1	excinuclease ABC subunit UvrB	92.0	11.0	44.0
