{ "type": "genome", "identifier": "GCF_015356825.1", "organism": "Catenulispora rubra", "title": "Catenulispora rubra", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Nicolaus Copernicus University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_015356825.1", "bioproject": "PRJNA224116", "biosample": "SAMN13895120", "wgs_master": "JAACYW000000000.1", "refseq_category": "reference genome", "taxid": "280293", "species_taxid": "280293", "organism_name": "Catenulispora rubra", "infraspecific_name": "strain=DSM 44948", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/11/12", "asm_name": "ASM1535682v1", "asm_submitter": "Nicolaus Copernicus University", "gbrs_paired_asm": "GCA_015356825.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/015/356/825/GCF_015356825.1_ASM1535682v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "12797989", "genome_size_ungapped": "12797989", "gc_percent": "70.000000", "replicon_count": "0", "scaffold_count": "871", "contig_count": "871", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_015356825.1-RS_2024_08_05", "annotation_date": "2024-08-05", "total_gene_count": "11254", "protein_coding_gene_count": "10704", "non_coding_gene_count": "81", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-11-12", "dateModified": "2020-11-12", "datePublished": "2020-11-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Catenulispora rubra" ], "sample_taxid": [ "280293" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], 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"below_threshold" }, { "organism_name": "Actinocrinis puniceicyclus", "strain": "strain=DSM 45618", "accession": "GCA_018283645.1", "taxid": 977794, "species_taxid": 977794, "relation_to_type": "type", "validated": true, "ani": 77.6271, "matched_fragments": 755, "total_fragments": 3903, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora humi", "strain": "strain=RB6PN24", "accession": "GCA_020907985.1", "taxid": 2893891, "species_taxid": 2893891, "relation_to_type": "type", "validated": true, "ani": 77.3378, "matched_fragments": 914, "total_fragments": 3903, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptacidiphilus melanogenes", "strain": "strain=NBRC 103184", "accession": "GCA_000787835.1", "taxid": 411235, "species_taxid": 411235, "relation_to_type": "type", "validated": true, "ani": 77.2216, "matched_fragments": 944, "total_fragments": 3903, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces thermodiastaticus", "strain": "strain=DSM 40573", "accession": "GCA_021394575.1", "taxid": 44061, "species_taxid": 44061, "relation_to_type": "type", "validated": true, "ani": 77.1398, "matched_fragments": 724, "total_fragments": 3903, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces rubrisoli", "strain": "strain=DSM 42083", "accession": "GCA_024436055.1", "taxid": 1387313, "species_taxid": 1387313, "relation_to_type": "type", "validated": true, "ani": 77.0627, "matched_fragments": 728, "total_fragments": 3903, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces parmotrematis", "strain": "strain=Ptm05", "accession": "GCA_019890615.1", "taxid": 2873249, "species_taxid": 2873249, "relation_to_type": "type", "validated": true, "ani": 77.0295, "matched_fragments": 848, "total_fragments": 3903, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora setae", "strain": "strain=KM-6054", "accession": "GCA_000269985.1", "taxid": 2066, "species_taxid": 2066, "relation_to_type": "type", "validated": true, "ani": 76.9893, "matched_fragments": 1037, "total_fragments": 3903, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces griseocarneus", "strain": "strain=JCM 4580", "accession": "GCA_014655595.1", "taxid": 51201, "species_taxid": 51201, "relation_to_type": "type", "validated": true, "ani": 76.9115, "matched_fragments": 771, "total_fragments": 3903, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinacidiphila epipremni", "strain": "strain=PRB2-1", "accession": "GCA_012034175.1", "taxid": 2053013, "species_taxid": 2053013, "relation_to_type": "type", "validated": true, "ani": 76.889, "matched_fragments": 1008, "total_fragments": 3903, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Embleya hyalina", "strain": "strain=NBRC 13850", "accession": "GCA_003967355.1", "taxid": 516124, "species_taxid": 516124, "relation_to_type": "type", "validated": true, "ani": 76.6644, "matched_fragments": 996, "total_fragments": 3903, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinokineospora enzanensis", "strain": "strain=DSM 44649", "accession": "GCA_000374445.1", "taxid": 155975, "species_taxid": 155975, "relation_to_type": "type", "validated": true, "ani": 76.3473, "matched_fragments": 677, "total_fragments": 3903, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kibdelosporangium philippinense", "strain": "strain=ATCC 49844", "accession": "GCA_021390435.3", "taxid": 211113, "species_taxid": 211113, "relation_to_type": "type", "validated": true, "ani": 75.9605, "matched_fragments": 475, "total_fragments": 3903, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 13.54, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_015356825.1", 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