{ "type": "genome", "identifier": "GCF_015356865.1", "organism": "Catenulispora pinisilvae", "title": "Catenulispora pinisilvae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Nicolaus Copernicus University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_015356865.1", "bioproject": "PRJNA224116", "biosample": "SAMN13939709", "wgs_master": "JAAFZA000000000.1", "refseq_category": "reference genome", "taxid": "2705253", "species_taxid": "2705253", "organism_name": "Catenulispora pinisilvae", "infraspecific_name": "strain=NH11", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/11/12", "asm_name": "ASM1535686v1", "asm_submitter": "Nicolaus Copernicus University", "gbrs_paired_asm": "GCA_015356865.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/015/356/865/GCF_015356865.1_ASM1535686v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "11469319", "genome_size_ungapped": "11469319", "gc_percent": "70.000000", "replicon_count": "0", "scaffold_count": "676", "contig_count": "676", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_015356865.1-RS_2024_08_05", "annotation_date": "2024-08-05", "total_gene_count": "10059", "protein_coding_gene_count": "9647", "non_coding_gene_count": "75", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-11-12", "dateModified": "2020-11-12", "datePublished": "2020-11-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Catenulispora pinisilvae" ], "sample_taxid": [ "2705253" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], 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"total_fragments": 3535, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Catenulispora pinistramenti", "strain": "strain=NL8", "accession": "GCA_018274385.1", "taxid": 2705254, "species_taxid": 2705254, "relation_to_type": "type", "validated": true, "ani": 94.7514, "matched_fragments": 2809, "total_fragments": 3535, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Catenulispora rubra", "strain": "strain=DSM 44948", "accession": "GCA_015356825.1", "taxid": 280293, "species_taxid": 280293, "relation_to_type": "type", "validated": true, "ani": 86.9882, "matched_fragments": 2221, "total_fragments": 3535, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Catenulispora acidiphila", "strain": "strain=DSM 44928", "accession": "GCA_000024025.1", "taxid": 304895, "species_taxid": 304895, "relation_to_type": "type", "validated": true, "ani": 86.4572, "matched_fragments": 2185, "total_fragments": 3535, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinocrinis puniceicyclus", "strain": "strain=DSM 45618", "accession": "GCA_018283645.1", "taxid": 977794, "species_taxid": 977794, "relation_to_type": "type", "validated": true, "ani": 77.6668, "matched_fragments": 708, "total_fragments": 3535, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces parmotrematis", "strain": "strain=Ptm05", "accession": "GCA_019890615.1", "taxid": 2873249, "species_taxid": 2873249, "relation_to_type": "type", "validated": true, "ani": 77.4189, "matched_fragments": 798, "total_fragments": 3535, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptacidiphilus jiangxiensis", "strain": "strain=CGMCC 4.1857", "accession": "GCA_900109465.1", "taxid": 235985, "species_taxid": 235985, "relation_to_type": "type", "validated": true, "ani": 77.1325, "matched_fragments": 952, "total_fragments": 3535, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora setae", "strain": "strain=KM-6054", "accession": "GCA_000269985.1", "taxid": 2066, "species_taxid": 2066, "relation_to_type": "type", "validated": true, "ani": 76.9989, "matched_fragments": 1039, "total_fragments": 3535, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces barringtoniae", "strain": "strain=JA03", "accession": "GCA_020819595.1", "taxid": 2892029, "species_taxid": 2892029, "relation_to_type": "type", "validated": true, "ani": 76.8926, "matched_fragments": 824, "total_fragments": 3535, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces spinosus", "strain": "strain=SBTS01", "accession": "GCA_020400655.1", "taxid": 2872623, "species_taxid": 2872623, "relation_to_type": "type", "validated": true, "ani": 76.886, "matched_fragments": 826, "total_fragments": 3535, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces sparsogenes", "strain": "strain=ATCC 25498", "accession": "GCA_001704635.1", "taxid": 67365, "species_taxid": 67365, "relation_to_type": "type", "validated": true, "ani": 76.8565, "matched_fragments": 803, "total_fragments": 3535, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces justiciae", "strain": "strain=3R004", "accession": "GCA_015163075.1", "taxid": 2780140, "species_taxid": 2780140, "relation_to_type": "type", "validated": true, "ani": 76.5539, "matched_fragments": 828, "total_fragments": 3535, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces deccanensis", "strain": "strain=KCTC 19241", "accession": "GCA_022385335.1", "taxid": 424188, "species_taxid": 424188, "relation_to_type": "type", "validated": true, "ani": 76.5434, "matched_fragments": 742, "total_fragments": 3535, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinokineospora enzanensis", "strain": "strain=DSM 44649", "accession": 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"d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Catenulisporaceae;g__Catenulispora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.119, "cell_length": -0.302, "doubling_h": null, "growth_tmp": 28.2, "optimum_tmp": 25.833, "optimum_ph": 5.833, "genome_size": 10467785.6, "gc_content": 69.8, "coding_genes": 8799.0, "rRNA16S_genes": 3.0, "tRNA_genes": 58.0, "gram_stain": 1.0, "sporulation": 1.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.666, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.333, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Catenulispora", "pinisilvae" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }