{ "type": "genome", "identifier": "GCF_015453285.1", "organism": "Lysobacter niastensis", "title": "Lysobacter niastensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Parma", "publication": [ {} ], "properties": { "assembly_accession": "GCF_015453285.1", "bioproject": "PRJNA224116", "biosample": "SAMN16713344", "wgs_master": "JADLZT000000000.1", "refseq_category": "reference genome", "taxid": "380629", "species_taxid": "380629", "organism_name": "Lysobacter niastensis", "infraspecific_name": "strain=DSM 18481", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/11/13", "asm_name": "ASM1545328v1", "asm_submitter": "University of Parma", "gbrs_paired_asm": "GCA_015453285.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/015/453/285/GCF_015453285.1_ASM1545328v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4034846", "genome_size_ungapped": "4034846", "gc_percent": "67.000000", "replicon_count": "0", "scaffold_count": "15", "contig_count": "15", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_015453285.1-RS_2024_05_06", "annotation_date": "2024-05-06", "total_gene_count": "3779", "protein_coding_gene_count": "3688", "non_coding_gene_count": "56", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-11-13", "dateModified": "2020-11-13", "datePublished": "2020-11-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Lysobacter niastensis" ], "sample_taxid": [ "380629" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "1.102 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4034846", "Number of Sequences": "15", "Longest Sequences (bp)": "594041", "N50 (bp)": "390805", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.9", "Number of CDSs": "3795", "Average Protein Length": "320.7", "Coding Ratio (%)": "90.5", "Number of rRNAs": "3", "Number of tRNAs": "51", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Lysobacter niastensis", "strain": "strain=DSM 18481", "accession": "GCA_015453285.1", "taxid": 380629, "species_taxid": 380629, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1336, "total_fragments": 1338, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Lysobacter arenosi", "strain": "strain=R7", "accession": "GCA_016613475.2", "taxid": 2795387, "species_taxid": 2795387, "relation_to_type": "type", "validated": true, "ani": 84.21, "matched_fragments": 855, "total_fragments": 1338, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter panacisoli", "strain": "strain=JCM 19212", "accession": "GCA_009765165.1", "taxid": 1255263, "species_taxid": 1255263, "relation_to_type": "type", "validated": true, "ani": 84.1638, "matched_fragments": 849, "total_fragments": 1338, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter prati", "strain": "strain=SYSU H10001", "accession": "GCA_009765215.1", "taxid": 2596704, "species_taxid": 2596704, "relation_to_type": "type", "validated": true, "ani": 83.7364, "matched_fragments": 865, "total_fragments": 1338, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vulcaniibacterium tengchongense", "strain": "strain=YIM 77520", "accession": "GCA_008033455.1", "taxid": 1273429, "species_taxid": 1273429, "relation_to_type": "type", "validated": true, "ani": 83.7262, "matched_fragments": 724, "total_fragments": 1338, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vulcaniibacterium tengchongense", "strain": "strain=DSM 25623", "accession": "GCA_003814555.1", "taxid": 1273429, "species_taxid": 1273429, "relation_to_type": "type", "validated": true, "ani": 83.5546, "matched_fragments": 779, "total_fragments": 1338, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter soli", "strain": "strain=KCTC 22011", "accession": "GCA_003382285.1", "taxid": 453783, "species_taxid": 453783, "relation_to_type": "type", "validated": true, "ani": 83.5458, "matched_fragments": 829, "total_fragments": 1338, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter terrestris", "strain": "strain=II4", "accession": "GCA_014489475.1", "taxid": 2865112, "species_taxid": 2865112, "relation_to_type": "type", "validated": true, "ani": 82.7745, "matched_fragments": 755, "total_fragments": 1338, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter silvisoli", "strain": "strain=zong2l5", "accession": "GCA_003382365.1", "taxid": 2293254, "species_taxid": 2293254, "relation_to_type": "type", "validated": true, "ani": 82.7664, "matched_fragments": 786, "total_fragments": 1338, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter arseniciresistens", "strain": "strain=ZS79", "accession": "GCA_000768335.1", "taxid": 1385522, "species_taxid": 1385522, "relation_to_type": "type", "validated": true, "ani": 82.2404, "matched_fragments": 625, "total_fragments": 1338, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter capsici", "strain": "strain=VKM B-2533", "accession": "GCA_014779555.2", "taxid": 435897, "species_taxid": 435897, "relation_to_type": "type", "validated": true, "ani": 81.7321, "matched_fragments": 777, "total_fragments": 1338, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter chinensis", "strain": "strain=TLK-CK17", "accession": "GCA_021725675.1", "taxid": 2912247, "species_taxid": 2912247, "relation_to_type": "type", "validated": true, "ani": 81.5706, "matched_fragments": 711, "total_fragments": 1338, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter luteus", "strain": "strain=CECT 30171", "accession": "GCA_907164845.1", "taxid": 2822368, "species_taxid": 2822368, "relation_to_type": "type", "validated": true, "ani": 81.4691, "matched_fragments": 595, "total_fragments": 1338, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter terrigena", "strain": "strain=17J7-1", "accession": "GCA_004361065.1", "taxid": 2488749, "species_taxid": 2488749, "relation_to_type": "type", "validated": true, "ani": 80.5731, "matched_fragments": 570, "total_fragments": 1338, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_015453285.1", "gtdb_species": "s__Lysobacter niastensis", "ani": 100.0, "matched_fragments": 1336, "total_fragments": 1338, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Lysobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_016613475.2", "gtdb_species": "s__Lysobacter arenosi", "ani": 84.2102, "matched_fragments": 855, "total_fragments": 1338, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Lysobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009765165.1", "gtdb_species": "s__Lysobacter panacisoli", "ani": 84.1833, "matched_fragments": 847, "total_fragments": 1338, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Lysobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017308985.1", "gtdb_species": "s__Lysobacter sp017308985", "ani": 83.7546, "matched_fragments": 832, "total_fragments": 1338, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Lysobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009765215.1", "gtdb_species": "s__Lysobacter prati", "ani": 83.7529, "matched_fragments": 863, "total_fragments": 1338, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Lysobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016735495.2", "gtdb_species": "s__Lysobacter sp016735495", "ani": 83.7305, "matched_fragments": 875, "total_fragments": 1338, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Lysobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003814555.1", "gtdb_species": "s__Lysobacter tengchongensis", "ani": 83.5888, "matched_fragments": 776, "total_fragments": 1338, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Lysobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003382285.1", "gtdb_species": "s__Lysobacter soli", "ani": 83.5707, "matched_fragments": 826, "total_fragments": 1338, "gtdb_taxonomy": 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"gc_content": 68.113, "coding_genes": 4691.193, "rRNA16S_genes": 2.166, "tRNA_genes": 53.666, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Lysobacter", "niastensis" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }