{ "type": "genome", "identifier": "GCF_015461845.1", "organism": "Pseudomonas mucoides", "title": "Pseudomonas mucoides", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Erciyes University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_015461845.1", "bioproject": "PRJNA224116", "biosample": "SAMN15848106", "wgs_master": "JACOPW000000000.1", "refseq_category": "reference genome", "taxid": "2730424", "species_taxid": "2730424", "organism_name": "Pseudomonas mucoides", "infraspecific_name": "strain=P154a", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/11/13", "asm_name": "ASM1546184v1", "asm_submitter": "Erciyes University", "gbrs_paired_asm": "GCA_015461845.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/015/461/845/GCF_015461845.1_ASM1546184v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7041063", "genome_size_ungapped": "7040872", "gc_percent": "59.000000", "replicon_count": "0", "scaffold_count": "20", "contig_count": "20", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_015461845.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "6557", "protein_coding_gene_count": "6379", "non_coding_gene_count": "69", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-11-13", "dateModified": "2020-11-13", "datePublished": "2020-11-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas mucoides" ], "sample_taxid": [ "2730424" ], "sample_host_organism": [ "Oncorhynchus mykiss" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Turkey:Rize" ], "sample_host_location_id": [], "data_size": "1.981 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7041063", "Number of Sequences": "20", "Longest Sequences (bp)": "1872639", "N50 (bp)": "859114", "Gap Ratio (%)": "0.002713", "GCcontent (%)": "58.8", "Number of CDSs": "6586", "Average Protein Length": "314.6", "Coding Ratio (%)": "88.3", "Number of rRNAs": "4", "Number of tRNAs": "63", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas mandelii", "strain": "strain=DSM 17967", "accession": "GCA_007858265.1", "taxid": 75612, "species_taxid": 75612, "relation_to_type": "suspected-type", "validated": true, "ani": 88.9471, "matched_fragments": 1834, "total_fragments": 2338, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas mandelii", "strain": "strain=NBRC 103147", "accession": "GCA_002091695.1", "taxid": 75612, "species_taxid": 75612, "relation_to_type": "suspected-type", "validated": true, "ani": 88.9363, "matched_fragments": 1809, "total_fragments": 2338, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas mandelii", "strain": "strain=LMG 21607", "accession": "GCA_900106065.1", "taxid": 75612, "species_taxid": 75612, "relation_to_type": "suspected-type", "validated": true, "ani": 88.9137, "matched_fragments": 1843, "total_fragments": 2338, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas lini", "strain": "strain=DSM 16768", "accession": "GCA_001042905.1", "taxid": 163011, "species_taxid": 163011, "relation_to_type": "type", "validated": true, "ani": 87.7079, "matched_fragments": 1552, "total_fragments": 2338, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas farris", "strain": "strain=SWRI79", "accession": "GCA_019145235.1", "taxid": 2841207, "species_taxid": 2841207, "relation_to_type": "type", "validated": true, "ani": 87.7028, "matched_fragments": 1555, "total_fragments": 2338, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas lini", "strain": "strain=CCUG 51522", "accession": "GCA_008801525.1", "taxid": 163011, "species_taxid": 163011, "relation_to_type": "type", "validated": true, "ani": 87.6864, "matched_fragments": 1556, "total_fragments": 2338, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas laurylsulfatiphila", "strain": "strain=AP3_16", "accession": "GCA_002934665.1", "taxid": 2011015, "species_taxid": 2011015, "relation_to_type": "type", "validated": true, "ani": 86.7948, "matched_fragments": 1581, "total_fragments": 2338, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas 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"strain=BML-PP036", "accession": "GCA_021602345.1", "taxid": 2892333, "species_taxid": 2892333, "relation_to_type": "type", "validated": true, "ani": 86.0483, "matched_fragments": 1492, "total_fragments": 2338, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas sputi", "strain": "strain=BML-PP014", "accession": "GCA_021603585.1", "taxid": 2892325, "species_taxid": 2892325, "relation_to_type": "type", "validated": true, "ani": 85.9798, "matched_fragments": 1452, "total_fragments": 2338, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas germanica", "strain": "strain=FIT28", "accession": "GCA_019614655.1", "taxid": 2815720, "species_taxid": 2815720, "relation_to_type": "type", "validated": true, "ani": 85.5695, "matched_fragments": 1506, "total_fragments": 2338, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas pergaminensis", "strain": "strain=1008", "accession": "GCA_024112395.1", 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