{ "type": "genome", "identifier": "GCF_015471425.1", "organism": "Pseudomonas cichorii", "title": "Pseudomonas cichorii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Kyushu University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_015471425.1", "bioproject": "PRJNA224116", "biosample": "SAMD00211192", "wgs_master": "BLWA00000000.1", "refseq_category": "na", "taxid": "36746", "species_taxid": "36746", "organism_name": "Pseudomonas cichorii", "infraspecific_name": "strain=LMG 2162", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/11/06", "asm_name": "ASM1547142v1", "asm_submitter": "Kyushu University", "gbrs_paired_asm": "GCA_015471425.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/015/471/425/GCF_015471425.1_ASM1547142v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5922346", "genome_size_ungapped": "5922346", "gc_percent": "58.000000", "replicon_count": "0", "scaffold_count": "81", "contig_count": "81", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_015471425.1-RS_2024_08_26", "annotation_date": "2024-08-26", "total_gene_count": "5204", "protein_coding_gene_count": "5048", "non_coding_gene_count": "64", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-11-06", "dateModified": "2020-11-06", "datePublished": "2020-11-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas cichorii" ], "sample_taxid": [ "36746" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "1.669 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5922346", "Number of Sequences": "81", "Longest Sequences (bp)": "796900", "N50 (bp)": "358147", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "58.1", "Number of CDSs": "5082", "Average Protein Length": "338.9", "Coding Ratio (%)": "87.2", "Number of rRNAs": "2", "Number of tRNAs": "55", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas cichorii", "strain": "strain=LMG 2162", "accession": "GCA_015471425.1", "taxid": 36746, "species_taxid": 36746, "relation_to_type": "suspected-type", "validated": true, "ani": 100.0, "matched_fragments": 1938, "total_fragments": 1939, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudomonas cichorii", "strain": "strain=DSM 50259", "accession": "GCA_018343775.1", "taxid": 36746, "species_taxid": 36746, "relation_to_type": "suspected-type", "validated": true, "ani": 99.9993, "matched_fragments": 1937, "total_fragments": 1939, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudomonas cichorii", "strain": "strain=ATCC 10857", "accession": "GCA_900104015.1", "taxid": 36746, "species_taxid": 36746, "relation_to_type": "suspected-type", "validated": true, "ani": 99.9888, "matched_fragments": 1928, "total_fragments": 1939, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudomonas syringae group genomosp. 3", "strain": "strain=ICMP3956", "accession": "GCA_001400635.1", "taxid": 251701, "species_taxid": 251701, "relation_to_type": "pathovar", "validated": true, "ani": 83.2986, "matched_fragments": 1157, "total_fragments": 1939, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas syringae group genomosp. 3", "strain": "strain=ICMP3882", "accession": "GCA_001400955.1", "taxid": 251701, "species_taxid": 251701, "relation_to_type": "pathovar", "validated": true, "ani": 83.1531, "matched_fragments": 1194, "total_fragments": 1939, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas viridiflava", "strain": "strain=DSM 6694", "accession": "GCA_001305955.1", "taxid": 33069, "species_taxid": 33069, "relation_to_type": "type", "validated": true, "ani": 83.1441, "matched_fragments": 1194, "total_fragments": 1939, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas syringae group genomosp. 3", "strain": "strain=ICMP3963", "accession": "GCA_001401175.1", "taxid": 251701, "species_taxid": 251701, "relation_to_type": "pathovar", "validated": true, "ani": 82.9296, "matched_fragments": 1157, "total_fragments": 1939, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas avellanae", 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