{ "type": "genome", "identifier": "GCF_015473105.1", "organism": "Paenibacillus glycanilyticus subsp. hiroshimensis", "title": "Paenibacillus glycanilyticus subsp. hiroshimensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Bioconversion Group, Research Institute for Sustainable Chemistry, Materials and Chemistry, National Institute of Advanced Industrial Science and Technology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_015473105.1", "bioproject": "PRJNA224116", "biosample": "SAMD00246549", "wgs_master": "BNJP00000000.1", "refseq_category": "na", "taxid": "2805378", "species_taxid": "126569", "organism_name": "Paenibacillus glycanilyticus subsp. hiroshimensis", "infraspecific_name": "strain=CCI5", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/11/04", "asm_name": "ASM1547310v1", "asm_submitter": "Bioconversion Group, Research Institute for Sustainable Chemistry, Materials and Chemistry, National Institute of Advanced Industrial Science and Technology", "gbrs_paired_asm": "GCA_015473105.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/015/473/105/GCF_015473105.1_ASM1547310v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6864972", "genome_size_ungapped": "6864972", "gc_percent": "51.000000", "replicon_count": "0", "scaffold_count": "49", "contig_count": "49", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_015473105.1-RS_2024_09_02", "annotation_date": "2024-09-02", "total_gene_count": "6339", "protein_coding_gene_count": "6158", "non_coding_gene_count": "144", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-11-04", "dateModified": "2020-11-04", "datePublished": "2020-11-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Paenibacillus glycanilyticus subsp. hiroshimensis" ], "sample_taxid": [ "2805378" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan:Hiroshima, Higashi-Hiroshima" ], "sample_host_location_id": [], "data_size": "1.952 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6864972", "Number of Sequences": "49", "Longest Sequences (bp)": "1115285", "N50 (bp)": "420663", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "50.8", "Number of CDSs": "6241", "Average Protein Length": "324.8", "Coding Ratio (%)": "88.6", "Number of rRNAs": "8", "Number of tRNAs": "89", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paenibacillus glycanilyticus subsp. hiroshimensis", "strain": "strain=CCI5", "accession": "GCA_015473105.1", "taxid": 2805378, "species_taxid": 126569, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2266, "total_fragments": 2266, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Paenibacillus glycanilyticus", "strain": "strain=NBRC 16618", "accession": "GCA_004000805.1", "taxid": 126569, "species_taxid": 126569, "relation_to_type": "type", "validated": true, "ani": 97.7431, "matched_fragments": 2025, "total_fragments": 2266, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Paenibacillus catalpae", "strain": "strain=CGMCC 1.10784", "accession": "GCA_900112695.1", "taxid": 1045775, "species_taxid": 1045775, "relation_to_type": "type", "validated": true, "ani": 84.1653, "matched_fragments": 1609, 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"Paenibacillus macerans", "strain": "strain=ATCC 8244", "accession": "GCA_000746875.1", "taxid": 44252, "species_taxid": 44252, "relation_to_type": "type", "validated": true, "ani": 76.6945, "matched_fragments": 142, "total_fragments": 2266, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus rhizophilus", "strain": "strain=7197", "accession": "GCA_003854965.1", "taxid": 1850366, "species_taxid": 1850366, "relation_to_type": "type", "validated": true, "ani": 76.1881, "matched_fragments": 125, "total_fragments": 2266, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus piscarius", "strain": "strain=P121", "accession": "GCA_022234545.1", "taxid": 1089681, "species_taxid": 1089681, "relation_to_type": "type", "validated": true, "ani": 76.0425, "matched_fragments": 141, "total_fragments": 2266, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_004000805.1", "gtdb_species": "s__Paenibacillus_C glycanilyticus", "ani": 97.7431, "matched_fragments": 2025, "total_fragments": 2266, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus_C", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.79", "min_intra_species_ani": "97.79", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_000023585.1", "gtdb_species": "s__Paenibacillus_C sp000023585", "ani": 92.1298, "matched_fragments": 1961, "total_fragments": 2266, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus_C", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004345425.1", "gtdb_species": "s__Paenibacillus_C sp004345425", "ani": 90.3879, "matched_fragments": 1824, "total_fragments": 2266, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus_C", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.19", "min_intra_species_ani": "99.19", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.96", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900112695.1", "gtdb_species": "s__Paenibacillus_C catalpae", "ani": 84.1621, "matched_fragments": 1610, "total_fragments": 2266, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus_C", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": 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sp011947265", "ani": 77.1, "matched_fragments": 256, "total_fragments": 2266, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus_C", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.187, "cell_length": 0.433, "doubling_h": 0.565, "growth_tmp": 30.0, "optimum_tmp": 32.5, "optimum_ph": 7.238, "genome_size": 6887557.0, "gc_content": 50.837, "coding_genes": 5381.029, "rRNA16S_genes": 10.237, "tRNA_genes": 93.313, "gram_stain": 1.0, "sporulation": 1.0, "motility": 1.0, "range_salinity": 0.0, "facultative_respiration": 1.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Paenibacillus", "glycanilyticus", "subsp.", "hiroshimensis" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }