{ "type": "genome", "identifier": "GCF_015476115.1", "organism": "Aegicerativicinus sediminis", "title": "Aegicerativicinus sediminis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Quanzhou Normal University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_015476115.1", "bioproject": "PRJNA224116", "biosample": "SAMN16657555", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2893202", "species_taxid": "2893202", "organism_name": "Aegicerativicinus sediminis", "infraspecific_name": "strain=SM2-F", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/11/15", "asm_name": "ASM1547611v1", "asm_submitter": "Quanzhou Normal University", "gbrs_paired_asm": "GCA_015476115.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/015/476/115/GCF_015476115.1_ASM1547611v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4094245", "genome_size_ungapped": "4094245", "gc_percent": "36.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_015476115.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "3533", "protein_coding_gene_count": "3480", "non_coding_gene_count": "47", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-11-15", "dateModified": "2020-11-15", "datePublished": "2020-11-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Aegicerativicinus sediminis" ], "sample_taxid": [ "2893202" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Quanzhou" ], "sample_host_location_id": [], "data_size": "1.147 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4094245", "Number of Sequences": "1", "Longest Sequences (bp)": "4094245", "N50 (bp)": "4094245", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "36.0", "Number of CDSs": "3458", "Average Protein Length": "360.4", "Coding Ratio (%)": "91.3", "Number of rRNAs": "6", "Number of tRNAs": "38", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Aegicerativicinus sediminis", "strain": "strain=SM2-F", "accession": "GCA_015476115.1", "taxid": 2893202, "species_taxid": 2893202, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1362, 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"status": "below_threshold" }, { "organism_name": "Winogradskyella sediminis", "strain": "strain=DSM 28134", "accession": "GCA_003387355.1", "taxid": 1382466, "species_taxid": 1382466, "relation_to_type": "type", "validated": true, "ani": 76.8698, "matched_fragments": 96, "total_fragments": 1364, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hanstruepera marina", "strain": "strain=NBU2968", "accession": "GCA_019880635.1", "taxid": 2873265, "species_taxid": 2873265, "relation_to_type": "type", "validated": true, "ani": 76.8044, "matched_fragments": 114, "total_fragments": 1364, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gelidibacter sediminis", "strain": "strain=DSM 28135", "accession": "GCA_004364975.1", "taxid": 1608710, "species_taxid": 1608710, "relation_to_type": "type", "validated": true, "ani": 76.7784, "matched_fragments": 82, "total_fragments": 1364, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella forsetii", "strain": "strain=HL857", "accession": "GCA_013394595.1", "taxid": 2686077, "species_taxid": 2686077, "relation_to_type": "type", "validated": true, "ani": 76.7267, "matched_fragments": 112, "total_fragments": 1364, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Confluentibacter flavum", "strain": "strain=3B", "accession": "GCA_002843175.1", "taxid": 1909700, "species_taxid": 1909700, "relation_to_type": "type", "validated": true, "ani": 76.7191, "matched_fragments": 102, "total_fragments": 1364, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium indicum", "strain": "strain=GPTSA100-9", "accession": "GCA_000455605.1", "taxid": 312277, "species_taxid": 312277, "relation_to_type": "type", "validated": true, "ani": 76.7038, "matched_fragments": 65, "total_fragments": 1364, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter pacificus", "strain": "strain=H164", "accession": "GCA_008033385.1", "taxid": 2599389, "species_taxid": 2599389, "relation_to_type": "type", "validated": true, "ani": 76.6477, "matched_fragments": 74, "total_fragments": 1364, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter marinivivus", "strain": "strain=ZY111", "accession": "GCA_003143755.1", "taxid": 2100723, "species_taxid": 2100723, "relation_to_type": "type", "validated": true, "ani": 76.6423, "matched_fragments": 108, "total_fragments": 1364, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tenacibaculum todarodis", "strain": "strain=LPB0136", "accession": "GCA_001889045.1", "taxid": 1850252, "species_taxid": 1850252, "relation_to_type": "type", "validated": true, "ani": 76.6251, "matched_fragments": 54, "total_fragments": 1364, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella flava", "strain": "strain=KCTC 52348", "accession": "GCA_014243395.1", "taxid": 1884876, 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