{ "type": "genome", "identifier": "GCF_015627105.1", "organism": "Acinetobacter baretiae", "title": "Acinetobacter baretiae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Cornell University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_015627105.1", "bioproject": "PRJNA224116", "biosample": "SAMN12610052", "wgs_master": "VTDM00000000.1", "refseq_category": "reference genome", "taxid": "2605383", "species_taxid": "2605383", "organism_name": "Acinetobacter baretiae", "infraspecific_name": "strain=B10A", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/11/20", "asm_name": "ASM1562710v1", "asm_submitter": "Cornell University", "gbrs_paired_asm": "GCA_015627105.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/015/627/105/GCF_015627105.1_ASM1562710v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2580418", "genome_size_ungapped": "2580418", "gc_percent": "37.500000", "replicon_count": "0", "scaffold_count": "70", "contig_count": "70", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_015627105.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "2520", "protein_coding_gene_count": "2376", "non_coding_gene_count": "71", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-11-20", "dateModified": "2020-11-20", "datePublished": "2020-11-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Acinetobacter baretiae" ], "sample_taxid": [ "2605383" ], "sample_host_organism": [ "Apis mellifera" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Stanford campus (California)" ], "sample_host_location_id": [], "data_size": "0.728 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2580418", "Number of Sequences": "70", "Longest Sequences (bp)": "220732", "N50 (bp)": "103504", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "37.5", "Number of CDSs": "2375", "Average Protein Length": "307.0", "Coding Ratio (%)": "84.8", "Number of rRNAs": "3", "Number of tRNAs": "63", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Acinetobacter baretiae", "strain": "strain=B10A", "accession": "GCA_015627105.1", "taxid": 2605383, "species_taxid": 2605383, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 823, "total_fragments": 825, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Acinetobacter rathckeae", "strain": "strain=EC24", "accession": "GCA_015627125.1", "taxid": 2605272, "species_taxid": 2605272, "relation_to_type": "type", "validated": true, "ani": 82.5736, "matched_fragments": 592, "total_fragments": 825, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter pollinis", "strain": "strain=SCC477", "accession": "GCA_015627175.1", "taxid": 2605270, "species_taxid": 2605270, "relation_to_type": "type", "validated": true, "ani": 79.2858, "matched_fragments": 305, "total_fragments": 825, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter nectaris", "strain": "strain=CIP 110549", "accession": "GCA_000488215.1", "taxid": 1219382, "species_taxid": 1219382, "relation_to_type": "type", "validated": true, "ani": 79.1052, "matched_fragments": 320, "total_fragments": 825, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter brisouii", "strain": "strain=DSM 18516", "accession": "GCA_000931655.1", "taxid": 396323, "species_taxid": 396323, "relation_to_type": "type", "validated": true, "ani": 78.2397, "matched_fragments": 183, "total_fragments": 825, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter brisouii", "strain": "strain=CIP 110357", "accession": "GCA_000488275.1", "taxid": 396323, "species_taxid": 396323, "relation_to_type": "type", "validated": true, "ani": 78.2088, "matched_fragments": 182, "total_fragments": 825, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter celticus", "strain": "strain=ANC 4603", "accession": "GCA_001707755.1", "taxid": 1891224, "species_taxid": 1891224, "relation_to_type": "type", "validated": true, "ani": 78.1486, "matched_fragments": 162, "total_fragments": 825, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter haemolyticus", "strain": "strain=NCTC10305", "accession": "GCA_900444835.1", "taxid": 29430, "species_taxid": 29430, "relation_to_type": "type", "validated": true, "ani": 78.1024, "matched_fragments": 147, "total_fragments": 825, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter lactucae", "strain": "strain=NRRL B-41902", "accession": "GCA_001605885.1", "taxid": 1785128, "species_taxid": 1785128, "relation_to_type": "type", "validated": true, "ani": 78.0855, "matched_fragments": 169, "total_fragments": 825, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter silvestris", "strain": "strain=ANC 4999", "accession": "GCA_002135235.1", "taxid": 1977882, "species_taxid": 1977882, "relation_to_type": "type", "validated": true, "ani": 78.0821, "matched_fragments": 166, "total_fragments": 825, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter albensis", "strain": "strain=ANC 4874", "accession": "GCA_900095025.1", "taxid": 1673609, "species_taxid": 1673609, "relation_to_type": "type", "validated": true, "ani": 77.9694, "matched_fragments": 165, "total_fragments": 825, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter rongchengensis", "strain": "strain=WCHAc060115", "accession": "GCA_003611475.1", "taxid": 2419601, "species_taxid": 2419601, "relation_to_type": "type", "validated": true, "ani": 77.8902, "matched_fragments": 177, "total_fragments": 825, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter oleivorans", "strain": "strain=KCTC 23045", "accession": "GCA_000836035.1", "taxid": 1148157, "species_taxid": 1148157, "relation_to_type": "suspected-type", "validated": true, "ani": 77.877, "matched_fragments": 173, "total_fragments": 825, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter oleivorans", "strain": "strain=DR1", "accession": "GCA_000196795.1", "taxid": 1148157, "species_taxid": 1148157, "relation_to_type": "suspected-type", "validated": true, "ani": 77.8427, "matched_fragments": 172, "total_fragments": 825, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter ihumii", "strain": "strain=Marseille-P8049", "accession": "GCA_900625095.1", "taxid": 2483802, "species_taxid": 2483802, "relation_to_type": "type", "validated": true, "ani": 77.8404, "matched_fragments": 167, "total_fragments": 825, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter guillouiae", "strain": "strain=CCUG 2491", "accession": "GCA_008802215.1", "taxid": 106649, "species_taxid": 106649, "relation_to_type": "type", "validated": true, "ani": 77.7555, "matched_fragments": 187, "total_fragments": 825, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter guillouiae", "strain": "strain=CIP 63.46", "accession": "GCA_000368145.1", "taxid": 106649, "species_taxid": 106649, "relation_to_type": "type", "validated": true, "ani": 77.738, "matched_fragments": 184, "total_fragments": 825, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter proteolyticus", "strain": "strain=NIPH 809", "accession": "GCA_000367945.1", "taxid": 1776741, "species_taxid": 1776741, "relation_to_type": "type", "validated": true, "ani": 77.7311, "matched_fragments": 154, "total_fragments": 825, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter wuhouensis", "strain": "strain=WCHA60", "accession": "GCA_001696605.3", "taxid": 1879050, "species_taxid": 1879050, "relation_to_type": "type", "validated": true, "ani": 77.6943, "matched_fragments": 168, "total_fragments": 825, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter towneri", "strain": "strain=CIP 107472", "accession": "GCA_000368785.1", "taxid": 202956, "species_taxid": 202956, "relation_to_type": "type", "validated": true, "ani": 77.6255, "matched_fragments": 180, "total_fragments": 825, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter towneri", "strain": "strain=DSM 14962", "accession": "GCA_000688495.1", "taxid": 202956, "species_taxid": 202956, "relation_to_type": "type", "validated": true, "ani": 77.5113, "matched_fragments": 175, "total_fragments": 825, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_015627105.1", "gtdb_species": "s__Acinetobacter baretiae", "ani": 100.0, "matched_fragments": 823, "total_fragments": 825, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.22", "min_intra_species_ani": "99.22", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_900096955.1", "gtdb_species": "s__Acinetobacter boissieri", "ani": 82.7389, "matched_fragments": 615, "total_fragments": 825, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_015627125.1", "gtdb_species": "s__Acinetobacter rathckeae", "ani": 82.5599, "matched_fragments": 591, "total_fragments": 825, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.78", "min_intra_species_ani": "99.78", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_015627175.1", "gtdb_species": "s__Acinetobacter pollinis", "ani": 79.2748, "matched_fragments": 306, "total_fragments": 825, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.68", "min_intra_species_ani": "99.51", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.92", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_000488215.1", "gtdb_species": "s__Acinetobacter nectaris", "ani": 79.1, "matched_fragments": 321, "total_fragments": 825, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900197575.1", "gtdb_species": "s__Acinetobacter apis", "ani": 78.9925, "matched_fragments": 306, "total_fragments": 825, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000488275.1", "gtdb_species": "s__Acinetobacter brisouii", "ani": 78.1757, "matched_fragments": 182, "total_fragments": 825, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.72", "min_intra_species_ani": "96.16", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.91", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_002135375.1", "gtdb_species": "s__Acinetobacter sp002135375", "ani": 78.1743, "matched_fragments": 162, "total_fragments": 825, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_008993995.1", "gtdb_species": "s__Acinetobacter brisouii_A", "ani": 78.0581, "matched_fragments": 206, "total_fragments": 825, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.99", "min_intra_species_ani": "97.99", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900107285.1", "gtdb_species": "s__Acinetobacter kyonggiensis", "ani": 77.9249, "matched_fragments": 181, "total_fragments": 825, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.53", "min_intra_species_ani": "95.22", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.86", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_009372215.1", "gtdb_species": "s__Acinetobacter portensis", "ani": 77.9025, "matched_fragments": 162, "total_fragments": 825, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.69", "min_intra_species_ani": "98.69", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000196795.1", "gtdb_species": "s__Acinetobacter oleivorans", "ani": 77.8292, "matched_fragments": 171, "total_fragments": 825, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.22", "min_intra_species_ani": "95.12", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.85", "num_clustered_genomes": 40, "status": "-" }, { "accession": "GCA_009912575.1", "gtdb_species": "s__Acinetobacter bereziniae_A", "ani": 77.6969, "matched_fragments": 165, "total_fragments": 825, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001696605.3", "gtdb_species": "s__Acinetobacter wuhouensis", "ani": 77.6941, "matched_fragments": 168, "total_fragments": 825, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.82", "min_intra_species_ani": "96.71", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.86", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_015218165.1", "gtdb_species": "s__Acinetobacter piscicola_A", "ani": 77.6837, "matched_fragments": 191, "total_fragments": 825, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.43", "min_intra_species_ani": "98.21", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.90", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_002135415.1", "gtdb_species": "s__Acinetobacter sp002135415", "ani": 77.6547, "matched_fragments": 175, "total_fragments": 825, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013009345.1", "gtdb_species": "s__Acinetobacter sp013009345", "ani": 77.6443, "matched_fragments": 166, "total_fragments": 825, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.73", "min_intra_species_ani": "96.63", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.86", "num_clustered_genomes": 5, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.019, "cell_length": 0.052, "doubling_h": -0.144, "growth_tmp": 30.578, "optimum_tmp": 29.638, "optimum_ph": 7.1, "genome_size": 3546146.356, "gc_content": 39.987, "coding_genes": 3356.54, "rRNA16S_genes": 6.191, "tRNA_genes": 76.716, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.034, "range_salinity": 0.5, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.652, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.347, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Acinetobacter", "baretiae" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }