{ "type": "genome", "identifier": "GCF_015627125.1", "organism": "Acinetobacter rathckeae", "title": "Acinetobacter rathckeae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Cornell University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_015627125.1", "bioproject": "PRJNA224116", "biosample": "SAMN12609920", "wgs_master": "VTDO00000000.1", "refseq_category": "reference genome", "taxid": "2605272", "species_taxid": "2605272", "organism_name": "Acinetobacter rathckeae", "infraspecific_name": "strain=EC24", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/11/20", "asm_name": "ASM1562712v1", "asm_submitter": "Cornell University", "gbrs_paired_asm": "GCA_015627125.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/015/627/125/GCF_015627125.1_ASM1562712v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2754552", "genome_size_ungapped": "2754452", "gc_percent": "39.500000", "replicon_count": "0", "scaffold_count": "17", "contig_count": "17", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_015627125.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "2620", "protein_coding_gene_count": "2501", "non_coding_gene_count": "74", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-11-20", "dateModified": "2020-11-20", "datePublished": "2020-11-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Acinetobacter rathckeae" ], "sample_taxid": [ "2605272" ], "sample_host_organism": [ "Epilobium canum (Onagraceae)" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: UC Davis campus (California)" ], "sample_host_location_id": [], "data_size": "0.777 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2754552", "Number of Sequences": "17", "Longest Sequences (bp)": "744468", "N50 (bp)": "399635", "Gap Ratio (%)": "0.003630", "GCcontent (%)": "39.3", "Number of CDSs": "2538", "Average Protein Length": "319.8", "Coding Ratio (%)": "88.4", "Number of rRNAs": "3", "Number of tRNAs": "66", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Acinetobacter rathckeae", "strain": "strain=EC24", "accession": "GCA_015627125.1", "taxid": 2605272, "species_taxid": 2605272, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 868, "total_fragments": 910, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Acinetobacter baretiae", "strain": "strain=B10A", "accession": "GCA_015627105.1", "taxid": 2605383, "species_taxid": 2605383, "relation_to_type": "type", "validated": true, "ani": 82.6189, "matched_fragments": 584, "total_fragments": 910, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter nectaris", "strain": "strain=CIP 110549", "accession": "GCA_000488215.1", "taxid": 1219382, "species_taxid": 1219382, "relation_to_type": "type", "validated": true, "ani": 79.7225, "matched_fragments": 348, "total_fragments": 910, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter pollinis", "strain": "strain=SCC477", "accession": "GCA_015627175.1", "taxid": 2605270, "species_taxid": 2605270, "relation_to_type": "type", "validated": true, "ani": 79.261, "matched_fragments": 299, "total_fragments": 910, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter silvestris", "strain": "strain=ANC 4999", "accession": "GCA_002135235.1", "taxid": 1977882, "species_taxid": 1977882, "relation_to_type": "type", "validated": true, "ani": 78.3563, "matched_fragments": 181, "total_fragments": 910, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter brisouii", "strain": "strain=CIP 110357", "accession": "GCA_000488275.1", "taxid": 396323, "species_taxid": 396323, "relation_to_type": "type", "validated": true, "ani": 78.3513, "matched_fragments": 223, "total_fragments": 910, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter wuhouensis", "strain": "strain=WCHA60", "accession": "GCA_001696605.3", "taxid": 1879050, "species_taxid": 1879050, "relation_to_type": "type", "validated": true, "ani": 78.3421, "matched_fragments": 176, "total_fragments": 910, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter brisouii", "strain": "strain=DSM 18516", "accession": "GCA_000931655.1", "taxid": 396323, "species_taxid": 396323, "relation_to_type": "type", "validated": true, "ani": 78.3322, "matched_fragments": 219, "total_fragments": 910, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter parvus", "strain": "strain=CIP 108168", "accession": "GCA_000368025.1", "taxid": 134533, "species_taxid": 134533, "relation_to_type": "type", "validated": true, "ani": 78.2655, "matched_fragments": 150, "total_fragments": 910, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter rongchengensis", "strain": "strain=WCHAc060115", "accession": "GCA_003611475.1", "taxid": 2419601, "species_taxid": 2419601, "relation_to_type": "type", "validated": true, "ani": 78.2141, "matched_fragments": 209, "total_fragments": 910, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter oleivorans", "strain": "strain=DR1", "accession": "GCA_000196795.1", "taxid": 1148157, "species_taxid": 1148157, "relation_to_type": "suspected-type", "validated": true, "ani": 78.2022, "matched_fragments": 189, "total_fragments": 910, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter bereziniae", "strain": "strain=CIP 70.12", "accession": "GCA_000368925.1", "taxid": 106648, "species_taxid": 106648, "relation_to_type": "type", "validated": true, "ani": 78.1829, "matched_fragments": 186, "total_fragments": 910, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter oleivorans", "strain": "strain=KCTC 23045", "accession": "GCA_000836035.1", "taxid": 1148157, "species_taxid": 1148157, "relation_to_type": "suspected-type", "validated": true, "ani": 78.1572, "matched_fragments": 185, "total_fragments": 910, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter haemolyticus", "strain": "strain=NCTC10305", "accession": "GCA_900444835.1", "taxid": 29430, "species_taxid": 29430, "relation_to_type": "type", "validated": true, "ani": 78.1443, "matched_fragments": 176, "total_fragments": 910, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter pecorum", "strain": "strain=Sa1BUA6", "accession": "GCA_014837015.1", "taxid": 2762215, "species_taxid": 2762215, "relation_to_type": "type", "validated": true, "ani": 78.078, "matched_fragments": 123, "total_fragments": 910, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter baumannii", "strain": "strain=ATCC 19606", "accession": "GCA_014116795.1", "taxid": 470, "species_taxid": 470, "relation_to_type": "type", "validated": true, "ani": 78.0742, "matched_fragments": 193, "total_fragments": 910, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter guillouiae", "strain": "strain=CCUG 2491", "accession": "GCA_008802215.1", "taxid": 106649, "species_taxid": 106649, "relation_to_type": "type", "validated": true, "ani": 77.9982, "matched_fragments": 192, "total_fragments": 910, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter guillouiae", "strain": "strain=CIP 63.46", "accession": "GCA_000368145.1", "taxid": 106649, "species_taxid": 106649, "relation_to_type": "type", "validated": true, "ani": 77.977, "matched_fragments": 196, "total_fragments": 910, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter equi", "strain": "strain=114", "accession": "GCA_001307195.1", "taxid": 1324350, "species_taxid": 1324350, "relation_to_type": "type", "validated": true, "ani": 77.9017, "matched_fragments": 194, "total_fragments": 910, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter ihumii", "strain": "strain=Marseille-P8049", "accession": "GCA_900625095.1", "taxid": 2483802, "species_taxid": 2483802, "relation_to_type": "type", "validated": true, "ani": 77.8081, "matched_fragments": 186, "total_fragments": 910, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCF_015627125.1", "gtdb_species": "s__Acinetobacter rathckeae", "ani": 100.0, "matched_fragments": 877, "total_fragments": 910, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.78", "min_intra_species_ani": "99.78", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_900096955.1", "gtdb_species": "s__Acinetobacter boissieri", "ani": 85.5674, "matched_fragments": 685, "total_fragments": 910, "gtdb_taxonomy": 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0.347, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Acinetobacter", "rathckeae" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }