{ "type": "genome", "identifier": "GCF_015627175.1", "organism": "Acinetobacter pollinis", "title": "Acinetobacter pollinis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Cornell University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_015627175.1", "bioproject": "PRJNA224116", "biosample": "SAMN12609918", "wgs_master": "VTDQ00000000.1", "refseq_category": "reference genome", "taxid": "2605270", "species_taxid": "2605270", "organism_name": "Acinetobacter pollinis", "infraspecific_name": "strain=SCC477", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/11/20", "asm_name": "ASM1562717v1", "asm_submitter": "Cornell University", "gbrs_paired_asm": "GCA_015627175.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/015/627/175/GCF_015627175.1_ASM1562717v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2752438", "genome_size_ungapped": "2752438", "gc_percent": "36.500000", "replicon_count": "0", "scaffold_count": "90", "contig_count": "90", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_015627175.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "2782", "protein_coding_gene_count": "2640", "non_coding_gene_count": "79", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-11-20", "dateModified": "2020-11-20", "datePublished": "2020-11-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Acinetobacter pollinis" ], "sample_taxid": [ "2605270" ], "sample_host_organism": [ "Scrophularia californica (Scrophulariaceae)" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Stebbins Cold Canyon Reserve (California)" ], "sample_host_location_id": [], "data_size": "0.779 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2752438", "Number of Sequences": "90", "Longest Sequences (bp)": "171504", "N50 (bp)": "66139", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "36.7", "Number of CDSs": "2607", "Average Protein Length": "298.3", "Coding Ratio (%)": "84.8", "Number of rRNAs": "9", "Number of tRNAs": "65", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Acinetobacter pollinis", "strain": "strain=SCC477", "accession": "GCA_015627175.1", "taxid": 2605270, "species_taxid": 2605270, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 869, "total_fragments": 871, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Acinetobacter nectaris", "strain": "strain=CIP 110549", "accession": "GCA_000488215.1", "taxid": 1219382, "species_taxid": 1219382, "relation_to_type": "type", "validated": true, "ani": 84.549, "matched_fragments": 604, "total_fragments": 871, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter baretiae", "strain": "strain=B10A", "accession": "GCA_015627105.1", "taxid": 2605383, "species_taxid": 2605383, "relation_to_type": "type", "validated": true, "ani": 79.4626, "matched_fragments": 292, "total_fragments": 871, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter rathckeae", "strain": "strain=EC24", "accession": "GCA_015627125.1", "taxid": 2605272, "species_taxid": 2605272, "relation_to_type": "type", "validated": true, "ani": 79.2577, "matched_fragments": 290, "total_fragments": 871, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter brisouii", "strain": "strain=CIP 110357", "accession": "GCA_000488275.1", "taxid": 396323, "species_taxid": 396323, "relation_to_type": "type", "validated": true, "ani": 78.6929, "matched_fragments": 210, "total_fragments": 871, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter baumannii", "strain": "strain=ATCC 19606", "accession": "GCA_000737145.1", "taxid": 470, "species_taxid": 470, "relation_to_type": "type", "validated": true, "ani": 78.6003, "matched_fragments": 193, "total_fragments": 871, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter baumannii", "strain": "strain=PartI-Abaumannii-RM8376", "accession": "GCA_022870045.1", "taxid": 470, "species_taxid": 470, "relation_to_type": "type", "validated": true, "ani": 78.5902, "matched_fragments": 190, "total_fragments": 871, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter brisouii", "strain": "strain=DSM 18516", "accession": "GCA_000931655.1", "taxid": 396323, "species_taxid": 396323, "relation_to_type": "type", "validated": true, "ani": 78.5712, "matched_fragments": 206, "total_fragments": 871, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter piscicola", "strain": "strain=LW15", "accession": "GCA_002233755.1", "taxid": 2006115, "species_taxid": 2006115, "relation_to_type": "type", "validated": true, "ani": 78.571, "matched_fragments": 189, "total_fragments": 871, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter portensis", "strain": "strain=AC 877", "accession": "GCA_009372215.1", "taxid": 1839785, "species_taxid": 1839785, "relation_to_type": "type", "validated": true, "ani": 78.5169, "matched_fragments": 197, "total_fragments": 871, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter oleivorans", "strain": "strain=KCTC 23045", "accession": "GCA_000836035.1", "taxid": 1148157, "species_taxid": 1148157, "relation_to_type": "suspected-type", "validated": true, "ani": 78.4934, "matched_fragments": 191, "total_fragments": 871, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter equi", "strain": "strain=114", "accession": "GCA_001307195.1", "taxid": 1324350, "species_taxid": 1324350, "relation_to_type": "type", "validated": true, "ani": 78.4774, "matched_fragments": 226, "total_fragments": 871, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter baumannii", "strain": "strain=ATCC 19606", "accession": "GCA_014116795.1", "taxid": 470, "species_taxid": 470, "relation_to_type": "type", "validated": true, "ani": 78.4613, "matched_fragments": 195, "total_fragments": 871, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter wuhouensis", "strain": "strain=WCHA60", "accession": "GCA_001696605.3", "taxid": 1879050, "species_taxid": 1879050, "relation_to_type": "type", "validated": true, "ani": 78.3996, "matched_fragments": 193, "total_fragments": 871, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter bereziniae", "strain": "strain=CIP 70.12", "accession": "GCA_000368925.1", "taxid": 106648, "species_taxid": 106648, "relation_to_type": "type", "validated": true, "ani": 78.3755, "matched_fragments": 187, "total_fragments": 871, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter gandensis", "strain": "strain=CCUG 68482", "accession": "GCA_008802205.1", "taxid": 1443941, "species_taxid": 1443941, "relation_to_type": "type", "validated": true, "ani": 78.3219, "matched_fragments": 171, "total_fragments": 871, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter silvestris", "strain": "strain=ANC 4999", "accession": "GCA_002135235.1", "taxid": 1977882, "species_taxid": 1977882, "relation_to_type": "type", "validated": true, "ani": 78.3193, "matched_fragments": 197, "total_fragments": 871, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter pittii", "strain": "strain=CIP70.29", "accession": "GCA_024390955.1", "taxid": 48296, "species_taxid": 48296, "relation_to_type": "type", "validated": true, "ani": 78.2799, "matched_fragments": 194, "total_fragments": 871, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter pecorum", "strain": "strain=Sa1BUA6", "accession": "GCA_014837015.1", "taxid": 2762215, "species_taxid": 2762215, "relation_to_type": "type", "validated": true, "ani": 78.2288, "matched_fragments": 130, "total_fragments": 871, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter gandensis", "strain": "strain=ANC 4275", "accession": "GCA_001678755.1", "taxid": 1443941, "species_taxid": 1443941, "relation_to_type": "type", "validated": true, "ani": 78.2265, "matched_fragments": 177, "total_fragments": 871, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_015627175.1", "gtdb_species": "s__Acinetobacter pollinis", "ani": 100.0, "matched_fragments": 869, "total_fragments": 871, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.68", "min_intra_species_ani": "99.51", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.92", "num_clustered_genomes": 4, "status": "conclusive" }, { "accession": "GCF_000488215.1", "gtdb_species": "s__Acinetobacter nectaris", "ani": 84.549, "matched_fragments": 604, "total_fragments": 871, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_015627125.1", "gtdb_species": "s__Acinetobacter rathckeae", "ani": 79.2688, "matched_fragments": 288, "total_fragments": 871, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.78", "min_intra_species_ani": "99.78", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900197575.1", "gtdb_species": "s__Acinetobacter apis", "ani": 79.1094, "matched_fragments": 296, "total_fragments": 871, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009372215.1", "gtdb_species": "s__Acinetobacter portensis", "ani": 78.5381, "matched_fragments": 196, "total_fragments": 871, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.69", "min_intra_species_ani": "98.69", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_009759685.1", "gtdb_species": "s__Acinetobacter baumannii", "ani": 78.5314, "matched_fragments": 193, "total_fragments": 871, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.86", "min_intra_species_ani": "96.67", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.80", "num_clustered_genomes": 5417, "status": "-" }, { "accession": "GCF_008993995.1", "gtdb_species": "s__Acinetobacter brisouii_A", "ani": 78.4782, "matched_fragments": 218, "total_fragments": 871, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.99", "min_intra_species_ani": "97.99", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001307195.1", "gtdb_species": "s__Acinetobacter equi", "ani": 78.4774, "matched_fragments": 226, "total_fragments": 871, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_009912575.1", "gtdb_species": "s__Acinetobacter bereziniae_A", "ani": 78.4603, "matched_fragments": 192, "total_fragments": 871, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000369045.1", "gtdb_species": "s__Acinetobacter pittii", "ani": 78.448, "matched_fragments": 201, "total_fragments": 871, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.31", "min_intra_species_ani": "95.52", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.84", "num_clustered_genomes": 337, "status": "-" }, { "accession": "GCF_000368265.1", "gtdb_species": "s__Acinetobacter sp000368265", "ani": 78.4383, "matched_fragments": 217, "total_fragments": 871, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.84", "min_intra_species_ani": "96.49", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.85", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_001605885.1", "gtdb_species": "s__Acinetobacter lactucae", "ani": 78.4279, "matched_fragments": 199, "total_fragments": 871, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.34", "min_intra_species_ani": "96.55", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.85", "num_clustered_genomes": 16, "status": "-" }, { "accession": "GCF_000196795.1", "gtdb_species": "s__Acinetobacter oleivorans", "ani": 78.4168, "matched_fragments": 194, "total_fragments": 871, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.22", "min_intra_species_ani": "95.12", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.85", "num_clustered_genomes": 40, "status": "-" }, { "accession": "GCF_001696605.3", "gtdb_species": "s__Acinetobacter wuhouensis", "ani": 78.3996, "matched_fragments": 193, "total_fragments": 871, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.82", "min_intra_species_ani": "96.71", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.86", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_000368925.1", "gtdb_species": "s__Acinetobacter bereziniae", "ani": 78.335, "matched_fragments": 189, "total_fragments": 871, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.33", "min_intra_species_ani": "97.29", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.83", "num_clustered_genomes": 53, "status": "-" }, { "accession": "GCF_003261585.1", "gtdb_species": "s__Acinetobacter sp003261585", "ani": 78.335, "matched_fragments": 215, "total_fragments": 871, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_902809855.1", "gtdb_species": "s__Acinetobacter sp902809855", "ani": 78.3241, "matched_fragments": 179, "total_fragments": 871, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001647675.1", "gtdb_species": "s__Acinetobacter sp001647675", "ani": 78.2742, "matched_fragments": 169, "total_fragments": 871, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016508255.1", "gtdb_species": "s__Acinetobacter calcoaceticus_E", "ani": 78.2728, "matched_fragments": 202, "total_fragments": 871, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009707625.1", "gtdb_species": "s__Acinetobacter sp009707625", "ani": 78.2699, "matched_fragments": 220, "total_fragments": 871, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", 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"status": "-" }, { "accession": "GCF_900096895.1", "gtdb_species": "s__Acinetobacter kookii", "ani": 78.1464, "matched_fragments": 141, "total_fragments": 871, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.51", "min_intra_species_ani": "97.51", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002135345.1", "gtdb_species": "s__Acinetobacter sp002135345", "ani": 77.9689, "matched_fragments": 186, "total_fragments": 871, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, 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