{ "type": "genome", "identifier": "GCF_015679265.1", "organism": "Pontivivens ytuae", "title": "Pontivivens ytuae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Yantai University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_015679265.1", "bioproject": "PRJNA224116", "biosample": "SAMN16815333", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2789856", "species_taxid": "2789856", "organism_name": "Pontivivens ytuae", "infraspecific_name": "strain=MT2928", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/11/24", "asm_name": "ASM1567926v1", "asm_submitter": "Yantai University", "gbrs_paired_asm": "GCA_015679265.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/015/679/265/GCF_015679265.1_ASM1567926v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4199362", "genome_size_ungapped": "4199362", "gc_percent": "67.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_015679265.1-RS_2024_04_05", "annotation_date": "2024-04-05", "total_gene_count": "4195", "protein_coding_gene_count": "4111", "non_coding_gene_count": "54", "pubmed_id": "34520339" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-11-24", "dateModified": "2020-11-24", "datePublished": "2020-11-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Pontivivens ytuae" ], "sample_taxid": [ "2789856" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Pacific Ocean: Mariana Trench" ], "sample_host_location_id": [], "data_size": "1.147 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4199362", "Number of Sequences": "1", "Longest Sequences (bp)": "4199362", "N50 (bp)": "4199362", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.2", "Number of CDSs": "4195", "Average Protein Length": "300.6", "Coding Ratio (%)": "90.1", "Number of rRNAs": "6", "Number of tRNAs": "47", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pontivivens ytuae", "strain": "strain=MT2928", "accession": "GCA_015679265.1", "taxid": 2789856, "species_taxid": 2789856, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1398, "total_fragments": 1399, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Halovulum dunhuangense", "strain": "strain=YYQ-30", "accession": "GCA_013093415.1", "taxid": 1505036, "species_taxid": 1505036, "relation_to_type": "type", "validated": true, "ani": 78.1681, "matched_fragments": 407, "total_fragments": 1399, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoroseicyclus tamaricis", "strain": "strain=CLL3-39", "accession": "GCA_010435925.1", "taxid": 2705421, "species_taxid": 2705421, "relation_to_type": "type", "validated": true, "ani": 78.0873, "matched_fragments": 384, "total_fragments": 1399, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontivivens insulae", "strain": "strain=CeCT 8812", "accession": "GCA_900302495.1", "taxid": 1639689, "species_taxid": 1639689, "relation_to_type": "type", "validated": true, "ani": 78.0868, "matched_fragments": 341, "total_fragments": 1399, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoroseicyclus tamaricis", "strain": "strain=CLL3-39", "accession": "GCA_012070395.1", "taxid": 2705421, "species_taxid": 2705421, "relation_to_type": "type", "validated": true, "ani": 78.0725, "matched_fragments": 383, "total_fragments": 1399, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontivivens insulae", "strain": "strain=DSM 103361", "accession": "GCA_003385715.1", "taxid": 1639689, "species_taxid": 1639689, "relation_to_type": "type", "validated": true, "ani": 78.061, "matched_fragments": 341, "total_fragments": 1399, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseivivax isoporae", "strain": "strain=LMG 25204", "accession": "GCA_000521865.1", "taxid": 591206, "species_taxid": 591206, "relation_to_type": "type", "validated": true, "ani": 77.929, "matched_fragments": 447, "total_fragments": 1399, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudooceanicola nanhaiensis", "strain": "strain=CGMCC 1.6293", "accession": "GCA_014645095.1", "taxid": 375761, "species_taxid": 375761, "relation_to_type": "type", "validated": true, "ani": 77.9203, "matched_fragments": 419, "total_fragments": 1399, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudooceanicola nanhaiensis", "strain": "strain=DSM 18065", "accession": "GCA_000688295.1", "taxid": 375761, "species_taxid": 375761, "relation_to_type": "type", "validated": true, "ani": 77.9057, "matched_fragments": 410, "total_fragments": 1399, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amaricoccus solimangrovi", "strain": "strain=HB172011", "accession": "GCA_006385685.1", "taxid": 2589815, "species_taxid": 2589815, "relation_to_type": "type", "validated": true, "ani": 77.8853, "matched_fragments": 403, "total_fragments": 1399, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jannaschia seohaensis", "strain": "strain=DSM 25227", "accession": "GCA_003149265.1", "taxid": 475081, "species_taxid": 475081, "relation_to_type": "type", "validated": true, "ani": 77.7806, "matched_fragments": 389, "total_fragments": 1399, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jannaschia seohaensis", "strain": "strain=DSM 25227", "accession": "GCA_900116765.1", "taxid": 475081, "species_taxid": 475081, "relation_to_type": "type", "validated": true, "ani": 77.774, "matched_fragments": 389, "total_fragments": 1399, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dinoroseobacter shibae", "strain": "strain=DFL 12", "accession": "GCA_000018145.1", "taxid": 215813, "species_taxid": 215813, "relation_to_type": "type", "validated": true, "ani": 77.7367, "matched_fragments": 366, "total_fragments": 1399, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum euryhalinum", "strain": "strain=DSM 4868", "accession": "GCA_004342445.1", "taxid": 35805, "species_taxid": 35805, "relation_to_type": 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77.3401, "matched_fragments": 329, "total_fragments": 1399, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus zhejiangensis", "strain": "strain=J6", "accession": "GCA_002847445.1", "taxid": 1077935, "species_taxid": 1077935, "relation_to_type": "type", "validated": true, "ani": 77.3388, "matched_fragments": 302, "total_fragments": 1399, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus siganidrum", "strain": "strain=M26", "accession": "GCA_003709565.1", "taxid": 1276757, "species_taxid": 1276757, "relation_to_type": "type", "validated": true, "ani": 77.3222, "matched_fragments": 347, "total_fragments": 1399, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevirhabdus pacifica", "strain": "strain=DSM 27767", "accession": "GCA_002797755.1", "taxid": 1267768, "species_taxid": 1267768, "relation_to_type": "type", "validated": true, "ani": 77.2741, "matched_fragments": 318, "total_fragments": 1399, 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"organism_name": "Paracoccus alcaliphilus", "strain": "strain=DSM 8512", "accession": "GCA_900110285.1", "taxid": 34002, "species_taxid": 34002, "relation_to_type": "type", "validated": true, "ani": 76.5284, "matched_fragments": 224, "total_fragments": 1399, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_015679265.1", "gtdb_species": "s__MT2928 sp015679265", "ani": 100.0, "matched_fragments": 1399, "total_fragments": 1399, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__MT2928", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_011290545.1", "gtdb_species": "s__Monaibacterium sp011290545", "ani": 78.572, 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