# locus_id	locus_tag	location	classification	internal_stop	indel	ref_id	description	query_cov	ref_cov	identity
MGA_1	LOCUS_00010	sequence1:1..993(+)	partial			WP_003400253.1	chromosomal replication initiator protein DnaA	100.0	65.1	98.8
MGA_6	LOCUS_00060	sequence1:6775..9870(+)	partial			WP_012634405.1	intein-containing DNA gyrase subunit A	73.2	60.4	88.6
MGA_32	LOCUS_00320	sequence1:35597..35968(+)	partial			WP_011085528.1	amidohydrolase family protein	83.7	28.6	32.7
MGA_33	LOCUS_00330	sequence1:36644..36931(+)	frameshift		36913	WP_076611786.1	IS3-like element ISMsm7 family transposase	94.7	24.4	35.1
MGA_34	LOCUS_00340	sequence1:37000..37797(+)	frameshift		36901	WP_164929392.1	IS3-like element ISGvi5 family transposase	97.4	65.1	47.3
MGA_35	LOCUS_00350	sequence1:37758..38360(-)	frameshift		38305	WP_005115911.1	alpha/beta hydrolase	84.5	56.6	48.5
MGA_37	LOCUS_00370	sequence1:39543..39902(+)	frameshift		39848	WP_003904572.1	IS256-like element IS1081 family transposase	71.4	20.5	69.4
MGA_38	LOCUS_00380	sequence1:39908..40150(+)	frameshift		39848,40325,40190	WP_003904572.1	IS256-like element IS1081 family transposase	96.2	18.6	85.7
MGA_39	LOCUS_00390	sequence1:40318..40608(+)	frameshift		40325,40190	WP_003904572.1	IS256-like element IS1081 family transposase	54.2	12.5	73.1
MGA_44	LOCUS_00440	sequence1:43070..44329(-)	partial			WP_011267118.1	bifunctional diguanylate cyclase/phosphodiesterase	62.3	45.3	32.6
MGA_78	LOCUS_00780	sequence1:78963..79475(-)	partial			WP_003416599.1	TetR/AcrR family transcriptional regulator	58.8	48.1	35.0
MGA_122	LOCUS_01220	sequence1:123692..124258(+)	internal_stop_codon	123683..123685(+)		WP_003405605.1	hypothetical protein	34.0	64.3	61.4
MGA_131	LOCUS_01310	sequence1:132795..133943(+)	partial			WP_011030349.1	FxSxx-COOH system tetratricopeptide repeat protein	43.5	19.9	33.5
MGA_141	LOCUS_01410	sequence1:143920..144165(+)	partial			WP_003407374.1	lysophospholipid acyltransferase family protein	93.8	26.5	40.8
MGA_146	LOCUS_01460	sequence1:147552..148337(-)	frameshift		148453	WP_013225407.1	alpha/beta hydrolase	98.9	80.6	57.4
MGA_153	LOCUS_01530	sequence1:153807..154622(+)	partial			WP_013228906.1	SDR family NAD(P)-dependent oxidoreductase	71.2	76.3	36.3
MGA_169	LOCUS_01690	sequence1:168391..169560(+)	partial			WP_011729073.1	GMC family oxidoreductase N-terminal domain-containing protein	94.9	73.7	62.3
MGA_172	LOCUS_01720	sequence1:171727..174204(-)	partial			WP_193484808.1	hypothetical protein	9.6	58.0	46.2
MGA_173	LOCUS_01730	sequence1:174216..175388(-)	partial			WP_010867504.1	tyrosine recombinase XerA	54.6	65.4	28.2
MGA_175	LOCUS_01750	sequence1:176638..176997(+)	partial			WP_011729073.1	GMC family oxidoreductase N-terminal domain-containing protein	91.6	21.8	66.1
MGA_179	LOCUS_01790	sequence1:180193..180354(+)	frameshift		180179	WP_011726806.1	GMC family oxidoreductase	96.2	9.8	78.4
MGA_184	LOCUS_01840	sequence1:184711..185961(+)	partial			WP_013229184.1	SpoIIE family protein phosphatase	58.9	63.5	50.4
MGA_192	LOCUS_01920	sequence1:192280..194313(-)	partial			WP_001291001.1	CHASE2 domain-containing protein	31.2	28.2	35.9
MGA_224	LOCUS_02240	sequence1:228653..229537(-)	partial			WP_067118245.1	LLM class F420-dependent oxidoreductase	67.3	69.0	38.9
MGA_231	LOCUS_02310	sequence1:235962..236426(-)	partial			WP_003408538.1	hypothetical protein	47.4	54.9	61.6
MGA_262	LOCUS_02620	sequence1:269721..271064(-)	partial			WP_010920958.1	aromatic ring-hydroxylating dioxygenase subunit alpha	50.1	56.9	32.3
MGA_270	LOCUS_02700	sequence1:277467..277634(-)	partial			WP_003400629.1	hypothetical protein	98.2	41.9	51.9
MGA_277	LOCUS_02770	sequence1:283515..284228(-)	partial			WP_004195335.1	GntR family transcriptional regulator	70.0	66.8	33.9
MGA_279	LOCUS_02790	sequence1:285113..286138(+)	frameshift		286093	WP_010957528.1	MFS transporter	91.8	68.2	37.9
MGA_280	LOCUS_02800	sequence1:286129..286536(+)	frameshift		286093	WP_010957755.1	MFS transporter	80.7	26.2	44.0
MGA_282	LOCUS_02820	sequence1:287606..288562(+)	frameshift		288406	WP_003403601.1	alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase	77.0	64.6	29.5
MGA_290	LOCUS_02900	sequence1:294771..295157(-)	partial			WP_003406577.1	DUF3558 domain-containing protein	100.0	69.2	55.5
MGA_294	LOCUS_02940	sequence1:297750..298376(-)	partial			WP_003400961.1	TetR/AcrR family transcriptional regulator	72.6	53.6	31.8
MGA_298	LOCUS_02980	sequence1:302583..304199(+)	partial			WP_003905649.1	PE family protein	24.3	21.2	60.3
MGA_311	LOCUS_03110	sequence1:315778..316200(+)	frameshift		316179	WP_005089437.1	SDR family oxidoreductase	93.6	56.7	58.8
MGA_312	LOCUS_03120	sequence1:316136..316465(+)	frameshift		316179	WP_011728668.1	SDR family oxidoreductase	81.7	38.5	57.3
MGA_333	LOCUS_03330	sequence1:339139..340221(+)	frameshift		340188	WP_041322279.1	long-chain-fatty-acid--AMP ligase FadD32	98.6	56.3	70.7
MGA_334	LOCUS_03340	sequence1:340218..341060(+)	frameshift		340203	WP_005112890.1	long-chain-fatty-acid--AMP ligase FadD32	95.4	41.9	64.8
MGA_348	LOCUS_03480	sequence1:356327..357133(+)	partial			WP_037392461.1	AraC family transcriptional regulator	85.4	69.1	30.6
MGA_410	LOCUS_04100	sequence1:421086..421724(+)	frameshift		421054	WP_003400961.1	TetR/AcrR family transcriptional regulator	98.6	74.6	72.7
MGA_418	LOCUS_04180	sequence1:429178..430959(-)	partial			WP_003901256.1	PPE family protein	77.6	67.3	49.0
MGA_479	LOCUS_04790	sequence1:487758..488141(-)	frameshift		488143	WP_003401102.1	phosphodiester glycosidase family protein	100.0	34.4	91.3
MGA_480	LOCUS_04800	sequence1:488138..488851(-)	frameshift		488143	WP_003899845.1	phosphodiester glycosidase family protein	99.6	62.9	80.1
MGA_490	LOCUS_04900	sequence1:497796..499385(+)	frameshift		499325	WP_010950358.1	beta-glucosidase	93.6	71.6	74.5
MGA_491	LOCUS_04910	sequence1:499367..499933(+)	frameshift		499325	WP_003401122.1	beta-glucosidase	99.5	27.1	72.2
MGA_496	LOCUS_04960	sequence1:504618..505634(+)	partial			WP_003908487.1	Ig-like domain-containing protein	77.2	73.9	85.8
MGA_497	LOCUS_04970	sequence1:505662..506552(+)	partial			WP_003916225.1	L,D-transpeptidase LdtMt4	82.4	66.7	70.1
MGA_516	LOCUS_05160	sequence1:532035..532463(-)	partial			WP_013228395.1	CD225/dispanin family protein	58.5	65.1	46.4
MGA_521	LOCUS_05210	sequence1:536108..552910(-)	frameshift		552981,553063	WP_010950491.1	PE family protein	2.2	14.6	59.7
MGA_522	LOCUS_05220	sequence1:552977..555472(-)	partial			WP_099318959.1	PE family protein	14.1	25.5	40.2
MGA_529	LOCUS_05290	sequence1:564309..564680(+)	partial			WP_003246252.1	nitrite reductase small subunit NirD	71.5	83.0	35.2
MGA_549	LOCUS_05490	sequence1:583624..584694(-)	partial			WP_011074089.1	sensor domain-containing diguanylate cyclase	53.7	40.4	35.8
MGA_595	LOCUS_05950	sequence1:637828..638403(-)	partial			WP_003899880.1	aminoglycoside N-acetyltransferase AAC(2')-Ic	56.0	59.1	79.4
MGA_629	LOCUS_06290	sequence1:675131..677029(+)	partial			WP_003401607.1	Hsp70 family protein	73.6	75.5	65.5
MGA_630	LOCUS_06300	sequence1:677102..678478(+)	partial			WP_011727115.1	hypothetical protein	69.2	57.1	36.4
MGA_644	LOCUS_06440	sequence1:691248..692327(-)	partial			WP_000682355.1	hypothetical protein	60.7	62.0	40.8
MGA_646	LOCUS_06460	sequence1:693274..694506(-)	partial			WP_003694771.1	cupin domain-containing protein	59.5	61.5	22.0
MGA_653	LOCUS_06530	sequence1:698866..699861(+)	frameshift		699825	WP_011729718.1	NAD(P)/FAD-dependent oxidoreductase	93.1	59.5	58.3
MGA_654	LOCUS_06540	sequence1:699848..700492(+)	frameshift		699831	WP_011729718.1	NAD(P)/FAD-dependent oxidoreductase	97.7	40.3	52.6
MGA_658	LOCUS_06580	sequence1:703691..705385(+)	frameshift,internal_stop_codon	703620..703622(+),703714..703716(+),703713..703715(+),703957..703959(+)	703553,703707,703662	WP_011727115.1	hypothetical protein	74.5	73.7	37.8
MGA_659	LOCUS_06590	sequence1:705512..707026(+)	frameshift,internal_stop_codon	707082..707084(+),707176..707178(+),707175..707177(+)	707124,707015	WP_011727115.1	hypothetical protein	62.1	55.9	43.4
MGA_666	LOCUS_06660	sequence1:712249..715278(-)	partial			WP_003401734.1	(Fe-S)-binding protein	73.7	83.1	84.8
MGA_675	LOCUS_06750	sequence1:725818..727593(-)	frameshift		727868,727773	WP_011727124.1	Hsp70 family protein	86.0	83.9	42.6
MGA_790	LOCUS_07900	sequence1:843106..844068(-)	partial			WP_011707188.1	esterase FrsA	82.5	66.8	25.8
MGA_820	LOCUS_08200	sequence1:875368..875646(+)	partial			WP_003402297.1	putative holin	72.8	84.8	67.2
MGA_906	LOCUS_09060	sequence1:959012..960868(+)	partial			WP_003900169.1	hypothetical protein	74.4	74.8	50.5
MGA_918	LOCUS_09180	sequence1:970257..970943(-)	partial			WP_010908794.1	hypothetical protein	65.8	73.4	63.3
MGA_929	LOCUS_09290	sequence1:982163..984640(-)	partial			WP_193484808.1	hypothetical protein	9.6	58.0	46.2
MGA_930	LOCUS_09300	sequence1:984652..985824(-)	partial			WP_010867504.1	tyrosine recombinase XerA	54.6	65.4	28.2
MGA_942	LOCUS_09420	sequence1:994787..995098(-)	partial			WP_014876727.1	ferredoxin--NADP reductase	92.2	26.8	67.4
MGA_958	LOCUS_09580	sequence1:1010418..1010759(+)	partial			WP_081656034.1	zf-TFIIB domain-containing protein	65.5	64.3	44.6
MGA_966	LOCUS_09660	sequence1:1015978..1016277(+)	partial			WP_003894957.1	hypothetical protein	61.6	73.5	60.7
MGA_977	LOCUS_09770	sequence1:1028016..1028336(+)	frameshift		1028309	WP_003420557.1	class I SAM-dependent methyltransferase	90.6	30.6	49.0
MGA_978	LOCUS_09780	sequence1:1028333..1028962(+)	frameshift		1028309	WP_003420557.1	class I SAM-dependent methyltransferase	99.0	65.6	53.6
MGA_983	LOCUS_09830	sequence1:1037988..1038662(+)	partial			WP_012258317.1	class I SAM-dependent methyltransferase	81.2	71.8	48.1
MGA_1005	LOCUS_10050	sequence1:1055077..1055502(-)	frameshift		1055163	WP_011727620.1	DinB family protein	74.5	60.0	80.0
MGA_1049	LOCUS_10490	sequence1:1105026..1105745(-)	partial			WP_010950373.1	PE family protein	41.0	11.8	56.1
MGA_1064	LOCUS_10640	sequence1:1114718..1116235(+)	internal_stop_codon	1116233..1116235(+)		WP_003898561.1	arylsulfatase AtsA	99.2	63.7	90.6
MGA_1065	LOCUS_10650	sequence1:1116239..1117090(+)	internal_stop_codon	1116233..1116235(+)		WP_003898561.1	arylsulfatase AtsA	100.0	36.0	82.0
MGA_1108	LOCUS_11080	sequence1:1154395..1155837(-)	partial			WP_010886098.1	PecA family PE domain-processing aspartic protease	56.5	28.9	46.0
MGA_1156	LOCUS_11560	sequence1:1201764..1202156(+)	partial			WP_012256499.1	ester cyclase	56.9	26.8	41.9
MGA_1158	LOCUS_11580	sequence1:1203696..1204310(-)	partial			WP_011727227.1	superoxide dismutase family protein	67.2	69.5	48.2
MGA_1164	LOCUS_11640	sequence1:1207752..1208588(+)	partial			WP_003418011.1	anti-sigma D factor RsdA	61.9	57.5	73.8
MGA_1187	LOCUS_11870	sequence1:1235189..1235632(-)	partial			WP_003408545.1	ATP transporter ATP-binding protein/permease	57.8	12.1	48.6
MGA_1196	LOCUS_11960	sequence1:1244850..1245803(+)	partial			WP_014206714.1	AraC family transcriptional regulator	45.1	39.8	32.2
MGA_1202	LOCUS_12020	sequence1:1250198..1250836(-)	partial			WP_005093224.1	TetR/AcrR family transcriptional regulator	71.7	78.9	33.3
MGA_1214	LOCUS_12140	sequence1:1265572..1266168(+)	partial			WP_003417452.1	NADP-dependent isocitrate dehydrogenase	93.9	45.5	91.9
MGA_1215	LOCUS_12150	sequence1:1266139..1266546(-)	partial			WP_114555269.1	IS30 family transposase	89.6	36.0	59.5
MGA_1217	LOCUS_12170	sequence1:1268720..1269442(-)	partial			WP_204525119.1	IS30-like element ISCfr4 family transposase	97.1	58.3	40.7
MGA_1218	LOCUS_12180	sequence1:1269572..1270303(+)	partial			WP_003417452.1	NADP-dependent isocitrate dehydrogenase	91.8	54.5	89.2
MGA_1229	LOCUS_12290	sequence1:1282403..1283734(-)	partial			WP_003420809.1	PE family protein	24.4	21.4	40.7
MGA_1230	LOCUS_12300	sequence1:1283809..1284405(-)	partial			WP_003905037.1	IS110 family transposase	96.5	33.5	85.9
MGA_1260	LOCUS_12600	sequence1:1312055..1313194(+)	partial			WP_003899026.1	PPE family protein	55.9	50.1	33.0
MGA_1266	LOCUS_12660	sequence1:1321076..1321387(+)	frameshift		1321057,1321075,1321036	WP_003417162.1	protein UsfY	99.0	74.5	75.5
MGA_1269	LOCUS_12690	sequence1:1322984..1323382(-)	partial			WP_011727905.1	STAS domain-containing protein	65.9	61.3	48.3
MGA_1275	LOCUS_12750	sequence1:1328033..1328272(-)	partial			WP_010886160.1	acyl-CoA carboxylase subunit epsilon	97.5	44.1	66.7
MGA_1279	LOCUS_12790	sequence1:1331324..1331986(-)	frameshift		1332042	WP_003899998.1	GtrA family protein	100.0	82.0	84.4
MGA_1291	LOCUS_12910	sequence1:1345055..1345510(-)	partial			WP_003899995.1	manganese-exporting P-type ATPase CtpC	95.4	20.1	83.3
MGA_1321	LOCUS_13210	sequence1:1376768..1377733(+)	partial			WP_004523980.1	helix-turn-helix domain-containing protein	29.6	30.4	33.7
MGA_1322	LOCUS_13220	sequence1:1377784..1378782(+)	partial			WP_037392461.1	AraC family transcriptional regulator	61.4	62.7	35.3
MGA_1339	LOCUS_13390	sequence1:1397180..1397644(-)	partial			WP_012803747.1	SRPBCC family protein	77.3	63.4	36.8
MGA_1340	LOCUS_13400	sequence1:1397683..1398012(-)	internal_stop_codon	1398223..1398225(-)		WP_003416932.1	Rv3235 family protein	100.0	52.6	69.6
MGA_1360	LOCUS_13600	sequence1:1417053..1418120(-)	partial			WP_003905037.1	IS110 family transposase	93.2	58.6	35.6
MGA_1427	LOCUS_14270	sequence1:1488044..1488532(+)	frameshift		1488026	WP_014467524.1	SDR family oxidoreductase	100.0	66.4	74.1
MGA_1436	LOCUS_14360	sequence1:1501138..1502523(+)	partial			WP_003862296.1	HIRAN domain-containing protein	59.2	60.1	35.8
MGA_1438	LOCUS_14380	sequence1:1506788..1509208(+)	partial			WP_011030180.1	BREX-2 system adenine-specific DNA-methyltransferase PglX	98.8	66.3	46.2
MGA_1440	LOCUS_14400	sequence1:1511592..1513535(-)	partial			WP_060486301.1	site-specific tyrosine recombinase XerD	19.6	40.4	33.3
MGA_1442	LOCUS_14420	sequence1:1514669..1514911(+)	partial			WP_003904572.1	IS256-like element IS1081 family transposase	88.8	18.1	65.3
MGA_1443	LOCUS_14430	sequence1:1515379..1516479(+)	partial			WP_011030180.1	BREX-2 system adenine-specific DNA-methyltransferase PglX	100.0	31.0	44.6
MGA_1456	LOCUS_14560	sequence1:1537828..1539078(+)	partial			WP_073950391.1	ATP-binding protein	96.6	47.8	31.4
MGA_1457	LOCUS_14570	sequence1:1539062..1540264(+)	frameshift,internal_stop_codon	1539076..1539078(+)	1539129	WP_073950391.1	ATP-binding protein	79.0	37.7	35.8
MGA_1463	LOCUS_14630	sequence1:1544155..1545423(+)	partial			WP_011036282.1	SDR family oxidoreductase	64.5	82.6	37.7
MGA_1469	LOCUS_14690	sequence1:1549201..1549581(+)	partial			WP_011730364.1	MMPL family transporter	94.4	15.7	73.1
MGA_1524	LOCUS_15240	sequence1:1604633..1605007(-)	partial			WP_146729243.1	DoxX family protein	81.5	74.8	40.6
MGA_1535	LOCUS_15350	sequence1:1612140..1612355(+)	partial			WP_003416383.1	hypothetical protein	94.4	60.9	79.1
MGA_1543	LOCUS_15430	sequence1:1619719..1620195(+)	partial			WP_003416124.1	hypothetical protein	46.2	49.7	64.4
MGA_1549	LOCUS_15490	sequence1:1625214..1625846(-)	partial			WP_011727524.1	DUF4352 domain-containing protein	62.4	61.9	41.0
MGA_1562	LOCUS_15620	sequence1:1639455..1640030(-)	partial			WP_011015467.1	LGFP repeat-containing protein	68.6	23.0	27.6
MGA_1580	LOCUS_15800	sequence1:1657966..1658595(-)	partial			WP_003917120.1	DUF732 domain-containing protein	73.7	84.0	37.7
MGA_1588	LOCUS_15880	sequence1:1665322..1670397(+)	frameshift,internal_stop_codon	1670354..1670356(+),1670353..1670355(+),1670395..1670397(+)	1666465,1670332,1670223	WP_010886165.1	PE family protein	7.0	7.7	60.5
MGA_1590	LOCUS_15900	sequence1:1671361..1672746(-)	frameshift		1671384	WP_003901535.1	sulfatase-like hydrolase/transferase	98.5	75.3	83.3
MGA_1592	LOCUS_15920	sequence1:1673091..1673492(+)	partial			WP_003416061.1	LLM class F420-dependent oxidoreductase	75.2	36.4	52.0
MGA_1602	LOCUS_16020	sequence1:1687015..1688958(-)	partial			WP_060486301.1	site-specific tyrosine recombinase XerD	19.6	40.4	33.3
MGA_1612	LOCUS_16120	sequence1:1696646..1697398(-)	partial			WP_030872867.1	hypothetical protein	26.4	54.1	43.9
MGA_1615	LOCUS_16150	sequence1:1698956..1700950(+)	partial			WP_010950451.1	PE family protein	20.2	16.1	42.5
MGA_1618	LOCUS_16180	sequence1:1703420..1704016(-)	partial			WP_013226070.1	TetR/AcrR family transcriptional regulator	69.2	65.2	41.8
MGA_1623	LOCUS_16230	sequence1:1709747..1711690(+)	partial			WP_060486301.1	site-specific tyrosine recombinase XerD	19.6	40.4	33.3
MGA_1624	LOCUS_16240	sequence1:1712104..1712337(+)	partial			WP_005112064.1	acyl-CoA dehydrogenase family protein	72.7	10.3	75.0
MGA_1625	LOCUS_16250	sequence1:1712375..1713400(+)	partial			WP_037392461.1	AraC family transcriptional regulator	59.8	62.7	36.3
MGA_1642	LOCUS_16420	sequence1:1731635..1732222(+)	partial			WP_064243679.1	chemotaxis protein CheB	88.2	50.3	36.9
MGA_1645	LOCUS_16450	sequence1:1735480..1735827(-)	partial			WP_011730106.1	OB-fold domain-containing protein	79.1	16.7	40.2
MGA_1646	LOCUS_16460	sequence1:1735877..1737070(+)	partial			WP_011730106.1	OB-fold domain-containing protein	98.7	69.3	43.5
MGA_1666	LOCUS_16660	sequence1:1756510..1756866(+)	partial			WP_011729798.1	LLM class F420-dependent oxidoreductase	83.9	31.2	68.7
MGA_1667	LOCUS_16670	sequence1:1756863..1757837(+)	partial			WP_037392461.1	AraC family transcriptional regulator	50.9	50.3	37.6
MGA_1708	LOCUS_17080	sequence1:1796196..1796576(+)	partial			WP_014466936.1	DUF4383 domain-containing protein	78.6	66.2	71.7
MGA_1742	LOCUS_17420	sequence1:1830521..1831444(+)	frameshift		1830414	WP_011726641.1	MinD/ParA family protein	89.3	58.6	36.7
MGA_1743	LOCUS_17430	sequence1:1831745..1832749(+)	partial			WP_011726641.1	MinD/ParA family protein	87.7	63.5	36.9
MGA_1764	LOCUS_17640	sequence1:1852126..1852791(+)	partial			WP_003415107.1	DNA-binding protein HupB	47.5	49.1	97.1
MGA_1774	LOCUS_17740	sequence1:1861490..1862218(-)	partial			WP_172451240.1	nuclear transport factor 2 family protein	93.4	60.7	48.5
MGA_1791	LOCUS_17910	sequence1:1879007..1880074(-)	partial			WP_003905037.1	IS110 family transposase	93.2	58.6	35.6
MGA_1835	LOCUS_18350	sequence1:1925336..1925830(-)	partial			WP_003414678.1	M23 family metallopeptidase	96.3	63.5	73.4
MGA_1842	LOCUS_18420	sequence1:1930784..1931350(+)	partial			WP_005112731.1	DUF1942 domain-containing protein	61.2	58.2	40.2
MGA_1869	LOCUS_18690	sequence1:1957922..1958851(-)	partial			WP_003409061.1	PPE family protein	65.4	44.3	38.0
MGA_1872	LOCUS_18720	sequence1:1960554..1961522(-)	internal_stop_codon	1960554..1960556(-)		WP_003414559.1	HoxN/HupN/NixA family nickel/cobalt transporter	96.6	82.5	78.8
MGA_1888	LOCUS_18880	sequence1:1978692..1981493(+)	partial			WP_003899505.1	translation initiation factor IF-2	66.8	69.2	93.3
MGA_1988	LOCUS_19880	sequence1:2074817..2075119(-)	internal_stop_codon	2074817..2074819(-)		WP_003899440.1	RidA family protein	100.0	70.4	80.0
MGA_1996	LOCUS_19960	sequence1:2080722..2081108(+)	partial			WP_003413930.1	dUTP diphosphatase	89.1	74.0	85.1
MGA_2027	LOCUS_20270	sequence1:2109501..2110547(+)	partial			WP_028174358.1	helix-turn-helix domain-containing protein	68.7	72.7	29.3
MGA_2029	LOCUS_20290	sequence1:2112110..2112409(+)	partial			WP_011726806.1	GMC family oxidoreductase	97.0	18.4	68.8
MGA_2030	LOCUS_20300	sequence1:2112414..2112677(+)	partial			WP_099042453.1	GMC family oxidoreductase N-terminal domain-containing protein	97.7	15.2	67.1
MGA_2059	LOCUS_20590	sequence1:2136999..2137307(+)	partial			WP_003413588.1	helix-turn-helix domain-containing protein	68.6	31.2	55.7
MGA_2086	LOCUS_20860	sequence1:2157888..2161709(-)	partial			WP_010886177.1	PE family protein	9.5	20.7	52.1
MGA_2090	LOCUS_20900	sequence1:2167636..2169399(+)	partial			WP_003413385.1	protein translocase subunit SecD	64.7	67.2	85.8
MGA_2095	LOCUS_20950	sequence1:2175558..2177255(-)	partial			WP_011727491.1	bifunctional serine/threonine-protein kinase/transporter substrate-binding domain-containing protein	48.1	44.6	58.6
MGA_2114	LOCUS_21140	sequence1:2193847..2195040(-)	partial			WP_002121854.1	hypothetical protein	78.3	68.0	32.6
MGA_2118	LOCUS_21180	sequence1:2200060..2200812(-)	partial			WP_003911922.1	DUF2189 domain-containing protein	97.2	74.5	54.3
MGA_2148	LOCUS_21480	sequence1:2229043..2229636(+)	partial			WP_003407180.1	lipoprotein LprF	100.0	70.9	73.6
MGA_2161	LOCUS_21610	sequence1:2243942..2244259(+)	frameshift		2243812,2243887	WP_003898857.1	integration host factor, actinobacterial type	100.0	55.3	84.8
MGA_2186	LOCUS_21860	sequence1:2269228..2270520(+)	partial			WP_003898492.1	HNH endonuclease signature motif containing protein	83.0	71.4	54.0
MGA_2200	LOCUS_22000	sequence1:2280944..2281258(+)	internal_stop_codon	2280896..2280898(+)		WP_003401938.1	HNH endonuclease signature motif containing protein	83.7	20.2	62.2
MGA_2212	LOCUS_22120	sequence1:2295604..2296617(-)	partial			WP_010886115.1	hypothetical protein	14.8	24.3	64.0
MGA_2222	LOCUS_22220	sequence1:2306451..2306801(+)	partial			WP_005114376.1	FKBP-type peptidyl-prolyl cis-trans isomerase	98.3	64.8	74.6
MGA_2241	LOCUS_22410	sequence1:2326728..2327495(+)	frameshift		2327408	WP_003902080.1	suf operon transcriptional regulator SufR	87.1	82.8	83.8
MGA_2251	LOCUS_22510	sequence1:2335657..2336181(-)	partial			WP_005082270.1	DUF5666 domain-containing protein	98.9	71.9	45.5
MGA_2286	LOCUS_22860	sequence1:2371081..2372268(+)	partial			WP_003899159.1	hypothetical protein	55.9	68.4	36.2
MGA_2298	LOCUS_22980	sequence1:2384656..2386125(+)	partial			WP_010941286.1	glycosyltransferase family 2 protein	43.1	64.9	32.4
MGA_2315	LOCUS_23150	sequence1:2408650..2409435(+)	frameshift,internal_stop_codon	2408549..2408551(+)	2408512,2408650,2408605	WP_003407670.1	class I SAM-dependent methyltransferase	100.0	75.2	85.4
MGA_2337	LOCUS_23370	sequence1:2451733..2453586(-)	partial			WP_010950514.1	serine/threonine-protein kinase PknH/PknJ	50.7	53.4	55.0
MGA_2338	LOCUS_23380	sequence1:2453601..2455481(-)	partial			WP_003898998.1	serine/threonine protein kinase PknE	50.6	58.1	50.0
MGA_2353	LOCUS_23530	sequence1:2471163..2472233(-)	partial			WP_011729073.1	GMC family oxidoreductase N-terminal domain-containing protein	99.2	70.1	52.1
MGA_2356	LOCUS_23560	sequence1:2473535..2473846(-)	partial			WP_013226453.1	helix-turn-helix domain-containing protein	90.3	63.7	53.8
MGA_2370	LOCUS_23700	sequence1:2491162..2492040(-)	partial			WP_003407798.1	NlpC/P60 family peptidoglycan-binding protein RipD	51.0	64.8	87.9
MGA_2397	LOCUS_23970	sequence1:2517056..2518522(-)	partial			WP_011727267.1	serine/threonine-protein kinase	57.4	56.7	64.1
MGA_2406	LOCUS_24060	sequence1:2527454..2527846(+)	partial			WP_003408004.1	TM2 domain-containing protein	83.1	73.3	77.8
MGA_2428	LOCUS_24280	sequence1:2550813..2552918(+)	partial			WP_011729255.1	serine/threonine-protein kinase	52.4	73.8	54.4
MGA_2437	LOCUS_24370	sequence1:2565272..2565718(-)	frameshift,internal_stop_codon	2565724..2565726(-)	2565849	WP_010950514.1	serine/threonine-protein kinase PknH/PknJ	96.6	24.2	38.9
MGA_2438	LOCUS_24380	sequence1:2565725..2567014(-)	partial			WP_010950585.1	serine/threonine protein kinase PknE	82.8	63.4	59.3
MGA_2454	LOCUS_24540	sequence1:2583922..2585367(+)	partial			WP_010950570.1	PE domain-containing protein	64.0	30.0	42.8
MGA_2455	LOCUS_24550	sequence1:2585542..2587377(+)	partial			WP_003420809.1	PE family protein	61.5	77.4	37.1
MGA_2457	LOCUS_24570	sequence1:2588073..2595182(+)	partial			WP_003411972.1	PE family protein	12.9	77.5	30.5
MGA_2471	LOCUS_24710	sequence1:2622006..2622761(-)	frameshift		2622952	WP_003901231.1	cytochrome P450	100.0	59.1	74.0
MGA_2472	LOCUS_24720	sequence1:2622833..2623300(-)	frameshift		2622952	WP_003901231.1	cytochrome P450	72.9	26.3	78.8
MGA_2481	LOCUS_24810	sequence1:2632110..2633252(+)	partial			WP_003404782.1	serine/threonine protein kinase PknD	81.1	43.4	42.1
MGA_2526	LOCUS_25260	sequence1:2687933..2688226(-)	partial			WP_003895709.1	VOC family protein	91.8	64.5	40.0
MGA_2532	LOCUS_25320	sequence1:2692442..2693200(+)	frameshift		2693185	WP_011730531.1	4Fe-4S binding protein	98.4	72.2	81.1
MGA_2533	LOCUS_25330	sequence1:2693221..2693472(+)	frameshift		2693185	WP_011730531.1	4Fe-4S binding protein	96.4	23.2	85.0
MGA_2535	LOCUS_25350	sequence1:2694007..2694606(-)	frameshift,internal_stop_codon	2694693..2694695(-)	2694683	WP_003408495.1	hypothetical protein	86.9	67.6	78.6
MGA_2543	LOCUS_25430	sequence1:2705632..2706117(+)	partial			WP_013225359.1	YbhB/YbcL family Raf kinase inhibitor-like protein	95.7	45.2	58.4
MGA_2550	LOCUS_25500	sequence1:2712409..2713122(-)	partial			WP_157890372.1	(2Fe-2S)-binding protein	74.7	84.6	62.4
MGA_2551	LOCUS_25510	sequence1:2713226..2713684(+)	partial			WP_037399409.1	AraC family transcriptional regulator	71.7	31.5	42.2
MGA_2553	LOCUS_25530	sequence1:2716131..2716790(+)	frameshift		2716781	WP_011729279.1	acyltransferase	94.5	46.8	64.7
MGA_2556	LOCUS_25560	sequence1:2718994..2719878(-)	partial			WP_010942960.1	DUF1295 domain-containing protein	67.0	76.2	33.7
MGA_2559	LOCUS_25590	sequence1:2722913..2723461(-)	partial			WP_011730617.1	hypothetical protein	68.1	68.4	42.0
MGA_2567	LOCUS_25670	sequence1:2734102..2734317(+)	frameshift,internal_stop_codon	2734059..2734061(+)	2734103	WP_003894739.1	TetR/AcrR family transcriptional regulator C-terminal domain-containing protein	88.7	29.0	43.8
MGA_2572	LOCUS_25720	sequence1:2737608..2738072(-)	internal_stop_codon	2737608..2737610(-),2737569..2737571(-)		WP_011728985.1	DUF5994 family protein	87.7	80.8	65.9
MGA_2593	LOCUS_25930	sequence1:2762654..2763310(+)	frameshift		2762648,2763308	WP_003408560.1	FAD-dependent oxidoreductase	100.0	47.4	79.8
MGA_2594	LOCUS_25940	sequence1:2763402..2763887(+)	frameshift		2763307	WP_003408560.1	FAD-dependent oxidoreductase	100.0	35.0	73.3
MGA_2602	LOCUS_26020	sequence1:2771919..2772752(-)	internal_stop_codon	2772795..2772797(-)		WP_011730134.1	M24 family metallopeptidase	99.3	72.9	62.5
MGA_2603	LOCUS_26030	sequence1:2772795..2773040(-)	internal_stop_codon	2772795..2772797(-)		WP_011730134.1	M24 family metallopeptidase	100.0	21.5	70.4
MGA_2630	LOCUS_26300	sequence1:2801071..2802459(-)	partial			WP_011726824.1	aromatic ring-hydroxylating dioxygenase subunit alpha	42.6	48.7	35.3
MGA_2633	LOCUS_26330	sequence1:2804941..2805177(-)	partial			WP_037394027.1	dihydrolipoamide acetyltransferase family protein	93.6	17.4	40.5
MGA_2634	LOCUS_26340	sequence1:2805170..2806168(-)	frameshift		2806205	WP_013228884.1	alpha-ketoacid dehydrogenase subunit alpha/beta	94.9	47.9	51.6
MGA_2646	LOCUS_26460	sequence1:2817237..2819063(-)	partial			WP_011015416.1	cytochrome b/b6 domain-containing protein	52.0	48.7	41.1
MGA_2656	LOCUS_26560	sequence1:2831563..2831886(+)	partial			WP_003406566.1	DUF732 domain-containing protein	79.4	73.5	38.8
MGA_2710	LOCUS_27100	sequence1:2893543..2893932(-)	frameshift		2893952	WP_003409319.1	LLM class F420-dependent oxidoreductase	100.0	42.0	77.5
MGA_2711	LOCUS_27110	sequence1:2893929..2894474(-)	frameshift		2893955	WP_003409319.1	LLM class F420-dependent oxidoreductase	93.9	55.4	82.4
MGA_2716	LOCUS_27160	sequence1:2898169..2899293(+)	partial			WP_003409337.1	adhesin Apa	50.3	57.5	76.1
MGA_2743	LOCUS_27430	sequence1:2926283..2926486(-)	partial			WP_003895017.1	(2Fe-2S)-binding protein	61.2	59.4	61.0
MGA_2781	LOCUS_27810	sequence1:2960666..2960962(+)	partial			WP_003409543.1	anti-sigma factor antagonist	98.0	67.1	78.1
MGA_2836	LOCUS_28360	sequence1:3007109..3007354(-)	partial			WP_003723640.1	elongation factor Tu	95.1	20.5	43.2
MGA_2885	LOCUS_28850	sequence1:3050865..3052478(+)	partial			WP_003899118.1	PecA family PE domain-processing aspartic protease	57.4	58.2	46.3
MGA_2886	LOCUS_28860	sequence1:3052600..3054420(+)	partial			WP_003405919.1	PPE family protein	29.0	28.5	60.2
MGA_2891	LOCUS_28910	sequence1:3057924..3059297(-)	partial			WP_003409179.1	PPE family protein	73.5	84.4	37.1
MGA_2893	LOCUS_28930	sequence1:3063445..3064395(+)	partial			WP_013229059.1	NlpC/P60 family protein	32.0	36.3	36.7
MGA_2895	LOCUS_28950	sequence1:3066071..3066766(+)	frameshift		3066475	WP_013531929.1	FAD-dependent monooxygenase	60.2	28.4	70.5
MGA_2896	LOCUS_28960	sequence1:3066703..3067545(+)	frameshift		3066475	WP_010968019.1	FAD-dependent monooxygenase	98.2	54.2	69.4
MGA_2900	LOCUS_29000	sequence1:3068597..3068854(+)	partial			WP_011731120.1	hypothetical protein	65.9	77.8	50.0
MGA_2904	LOCUS_29040	sequence1:3074159..3075550(+)	partial			WP_010886177.1	PE family protein	26.3	20.9	57.4
MGA_2909	LOCUS_29090	sequence1:3078494..3079045(+)	partial			WP_011727649.1	SHOCT domain-containing protein	54.1	37.1	35.2
MGA_2931	LOCUS_29310	sequence1:3095894..3097837(-)	partial			WP_060486301.1	site-specific tyrosine recombinase XerD	19.6	40.4	33.3
MGA_2938	LOCUS_29380	sequence1:3103216..3104154(+)	partial			WP_010938064.1	GGDEF domain-containing protein	47.1	51.4	36.9
MGA_2960	LOCUS_29600	sequence1:3125383..3125763(-)	partial			WP_011727909.1	hypothetical protein	73.0	79.3	45.7
MGA_2995	LOCUS_29950	sequence1:3167418..3168215(-)	frameshift,internal_stop_codon	3168212..3168214(-)	3168248	WP_003902238.1	apolipoprotein N-acyltransferase	100.0	30.7	82.1
MGA_2996	LOCUS_29960	sequence1:3168225..3170027(-)	frameshift,internal_stop_codon	3168225..3168227(-),3168212..3168214(-)	3168248	WP_003902238.1	apolipoprotein N-acyltransferase	89.5	60.9	76.9
MGA_2998	LOCUS_29980	sequence1:3171669..3171971(-)	partial			WP_200876602.1	PP2C family protein-serine/threonine phosphatase	75.0	15.9	55.3
MGA_3008	LOCUS_30080	sequence1:3181020..3182411(+)	partial			WP_003912345.1	HNH endonuclease signature motif containing protein	84.2	73.8	56.6
MGA_3043	LOCUS_30430	sequence1:3216011..3217144(+)	partial			WP_010950655.1	DUF5631 domain-containing protein	98.1	54.8	38.7
MGA_3081	LOCUS_30810	sequence1:3254977..3255276(-)	partial			WP_003411107.1	hypothetical protein	96.0	70.8	80.4
MGA_3099	LOCUS_30980	sequence1:3274382..3274987(+)	partial			WP_003411129.1	phosphoribosyltransferase family protein	99.0	56.5	75.4
MGA_3148	LOCUS_31470	sequence1:3325477..3326439(-)	partial			WP_003411405.1	MmpS family transport accessory protein	30.0	32.8	88.8
MGA_3168	LOCUS_31670	sequence1:3346445..3348286(+)	partial			WP_011729702.1	2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase	55.1	56.9	80.8
MGA_3192	LOCUS_31910	sequence1:3376385..3377104(+)	frameshift		3376321,3376390	WP_003411507.1	HAD family hydrolase	95.4	76.6	68.0
MGA_3202	LOCUS_32010	sequence1:3383944..3385449(-)	partial			WP_002399999.1	phage terminase large subunit	45.9	47.9	39.0
MGA_3243	LOCUS_32420	sequence1:3421044..3421880(-)	partial			WP_003901363.1	apolipoprotein N-acyltransferase	96.0	53.2	71.2
MGA_3247	LOCUS_32460	sequence1:3424760..3425266(+)	partial			WP_223495338.1	hypothetical protein	28.6	70.0	59.2
MGA_3260	LOCUS_32590	sequence1:3435474..3436997(+)	partial			WP_013230569.1	serine/threonine-protein kinase	61.3	54.5	53.7
MGA_3262	LOCUS_32610	sequence1:3438061..3439941(+)	partial			WP_011727491.1	bifunctional serine/threonine-protein kinase/transporter substrate-binding domain-containing protein	44.2	45.7	58.8
MGA_3268	LOCUS_32670	sequence1:3444370..3444891(+)	partial			WP_003407737.1	SDR family oxidoreductase	77.5	47.2	46.3
MGA_3270	LOCUS_32690	sequence1:3445472..3446548(+)	partial			WP_013227909.1	DUF5685 family protein	91.3	72.3	50.3
MGA_3275	LOCUS_32740	sequence1:3451653..3452201(-)	partial			WP_013229251.1	TetR/AcrR family transcriptional regulator C-terminal domain-containing protein	74.7	64.8	34.7
MGA_3279	LOCUS_32780	sequence1:3454417..3455277(-)	partial			WP_003899254.1	hypothetical protein	66.1	85.0	61.2
MGA_3294	LOCUS_32930	sequence1:3469046..3469738(-)	partial			WP_011730054.1	SDR family oxidoreductase	84.8	71.3	32.3
MGA_3301	LOCUS_33000	sequence1:3474692..3475996(+)	partial			WP_191850187.1	PP2C family protein-serine/threonine phosphatase	66.1	54.6	38.1
MGA_3306	LOCUS_33050	sequence1:3481091..3481351(+)	frameshift		3481312,3481393,3480931,3481034,3481068	WP_125007056.1	IS256 family transposase	86.0	22.9	35.1
MGA_3311	LOCUS_33100	sequence1:3484512..3484817(+)	frameshift		3484513	WP_003408840.1	effector	67.3	72.3	83.8
MGA_3312	LOCUS_33110	sequence1:3485204..3485788(+)	frameshift		3485250,3484949,3485094,3485766,3485208,3485163,3485085	WP_005093506.1	Nramp family divalent metal transporter	88.1	30.6	69.3
MGA_3313	LOCUS_33120	sequence1:3485779..3486324(+)	frameshift		3485761	WP_005093506.1	Nramp family divalent metal transporter	98.3	30.9	60.7
MGA_3323	LOCUS_33220	sequence1:3494529..3494858(+)	partial			WP_225580817.1	IS3 family transposase	69.7	19.7	82.9
MGA_3324	LOCUS_33230	sequence1:3494894..3495091(+)	frameshift,internal_stop_codon	3495020..3495022(+)	3495016,3495250	WP_011727957.1	DDE-type integrase/transposase/recombinase	76.9	11.5	69.2
MGA_3325	LOCUS_33240	sequence1:3495028..3495372(+)	frameshift,internal_stop_codon	3495020..3495022(+)	3495016,3495250,3495482	WP_011727957.1	DDE-type integrase/transposase/recombinase	63.2	15.9	84.7
MGA_3326	LOCUS_33250	sequence1:3495483..3495716(+)	frameshift		3495249,3495677,3495481	WP_011727957.1	DDE-type integrase/transposase/recombinase	84.4	14.3	89.2
MGA_3327	LOCUS_33260	sequence1:3495763..3496182(+)	frameshift		3496152,3495481,3495677	WP_011727957.1	DDE-type integrase/transposase/recombinase	92.8	28.5	79.8
MGA_3328	LOCUS_33270	sequence1:3496955..3497134(+)	frameshift		3496955,3496711	WP_011727958.1	IS21-like element helper ATPase IstB	67.8	14.1	92.5
MGA_3329	LOCUS_33280	sequence1:3497597..3497878(+)	frameshift,internal_stop_codon	3497647..3497649(+)	3497405,3497670	WP_085976939.1	IS3 family transposase	36.6	8.8	73.5
MGA_3335	LOCUS_33340	sequence1:3505760..3507376(-)	internal_stop_codon	3507398..3507400(-)		WP_189742800.1	APC family permease	98.7	82.6	49.8
MGA_3336	LOCUS_33350	sequence1:3507398..3507706(-)	internal_stop_codon	3507398..3507400(-)		WP_002379167.1	APC family permease	81.4	13.5	39.8
MGA_3337	LOCUS_33360	sequence1:3508204..3509970(+)	partial			WP_011144393.1	potassium channel protein	86.6	73.6	25.3
MGA_3341	LOCUS_33400	sequence1:3512979..3515552(-)	partial			WP_013227688.1	SpoIIE family protein phosphatase	58.5	36.2	48.6
MGA_3349	LOCUS_33480	sequence1:3521893..3522282(-)	frameshift		3521919	WP_003412264.1	Low molecular weight antigen MTB12	93.8	69.6	42.1
MGA_3356	LOCUS_33550	sequence1:3529267..3530955(+)	partial			WP_010967670.1	nitric oxide reductase activation protein NorD	50.2	44.8	35.2
MGA_3359	LOCUS_33580	sequence1:3533326..3533790(-)	partial			WP_012804238.1	nucleoside/nucleotide kinase family protein	91.6	66.5	41.3
MGA_3361	LOCUS_33600	sequence1:3534162..3535469(+)	partial			WP_003400514.1	glycosyltransferase family 87 protein	87.1	70.0	27.7
MGA_3365	LOCUS_33640	sequence1:3537672..3538538(-)	partial			WP_003899282.1	TPM domain-containing protein	65.6	29.1	37.0
MGA_3368	LOCUS_33670	sequence1:3541345..3542301(-)	partial			WP_010966839.1	enoyl-[acyl-carrier-protein] reductase FabK	70.8	75.5	37.8
MGA_3406	LOCUS_34050	sequence1:3593479..3595995(+)	partial			WP_003408545.1	ATP transporter ATP-binding protein/permease	63.1	61.4	44.5
MGA_3413	LOCUS_34120	sequence1:3605404..3605892(-)	internal_stop_codon	3605404..3605406(-)		WP_003899112.1	CAP domain-containing protein	97.5	72.4	65.6
MGA_3431	LOCUS_34300	sequence1:3621000..3621401(+)	partial			WP_003891979.1	DUF5994 family protein	88.0	71.4	42.4
MGA_3434	LOCUS_34330	sequence1:3623864..3624034(-)	partial			WP_003402198.1	superoxide dismutase family protein	91.1	31.7	48.7
MGA_3435	LOCUS_34340	sequence1:3624265..3624552(+)	frameshift		3624534	WP_076611786.1	IS3-like element ISMsm7 family transposase	94.7	24.4	35.1
MGA_3436	LOCUS_34350	sequence1:3624621..3625022(+)	frameshift		3624522	WP_211285741.1	IS3 family transposase	82.0	28.9	34.5
MGA_3438	LOCUS_34370	sequence1:3626958..3627578(+)	partial			WP_164929392.1	IS3-like element ISGvi5 family transposase	70.4	36.4	53.7
MGA_3439	LOCUS_34380	sequence1:3627630..3628316(+)	partial			WP_009935676.1	IS110-like element IS1547 family transposase	83.8	52.7	57.8
MGA_3440	LOCUS_34390	sequence1:3628336..3628947(-)	partial			WP_010950329.1	DUF5631 domain-containing protein	88.7	44.7	49.4
MGA_3443	LOCUS_34420	sequence1:3629947..3631413(-)	partial			WP_005090204.1	hypothetical protein	65.0	59.1	39.6
MGA_3447	LOCUS_34460	sequence1:3634236..3636179(+)	partial			WP_060486301.1	site-specific tyrosine recombinase XerD	19.6	40.4	33.3
MGA_3448	LOCUS_34470	sequence1:3636433..3636927(-)	partial			WP_003402198.1	superoxide dismutase family protein	54.3	37.1	69.7
MGA_3470	LOCUS_34690	sequence1:3657682..3659805(-)	partial			WP_003412235.1	PhoH family protein	33.4	68.2	89.6
MGA_3479	LOCUS_34780	sequence1:3666990..3667505(+)	partial			WP_005092398.1	SagB family peptide dehydrogenase	100.0	36.0	73.7
MGA_3484	LOCUS_34830	sequence1:3681740..3682339(+)	partial			WP_003973221.1	GNAT family N-acetyltransferase	83.9	72.7	50.6
MGA_3492	LOCUS_34910	sequence1:3691624..3691947(+)	frameshift		3691842	WP_005095802.1	MmpS family transport accessory protein	68.2	55.3	63.0
MGA_3495	LOCUS_34940	sequence1:3697754..3698641(+)	frameshift		3698593	WP_003409179.1	PPE family protein	90.5	71.5	36.4
MGA_3499	LOCUS_34980	sequence1:3702607..3702945(-)	frameshift		3702816,3703003,3702853,3703021	WP_172463354.1	IS3 family transposase	83.0	24.8	36.4
MGA_3503	LOCUS_35020	sequence1:3707805..3709259(-)	partial			WP_003899120.1	cation transporter ATPase CptG	97.9	65.1	57.9
MGA_3504	LOCUS_35030	sequence1:3710080..3710391(+)	partial			WP_003410726.1	hypothetical protein	63.1	59.4	53.8
MGA_3505	LOCUS_35040	sequence1:3710448..3710834(+)	frameshift,internal_stop_codon	3710847..3710849(+),3710745..3710747(+),3710769..3710771(+),3710880..3710882(+)	3710732	WP_003899164.1	IS3 family transposase	63.3	39.8	59.3
MGA_3506	LOCUS_35050	sequence1:3710853..3711182(+)	internal_stop_codon	3710832..3710834(+)		WP_003887884.1	IS3 family transposase	92.7	31.9	52.5
MGA_3509	LOCUS_35080	sequence1:3714374..3714718(+)	partial			WP_076611786.1	IS3-like element ISMsm7 family transposase	95.6	28.2	53.2
MGA_3513	LOCUS_35120	sequence1:3717966..3718139(-)	partial			WP_011727856.1	IS256 family transposase	100.0	13.9	73.8
MGA_3518	LOCUS_35170	sequence1:3722239..3722667(+)	internal_stop_codon	3722837..3722839(+)		WP_164929392.1	IS3-like element ISGvi5 family transposase	95.1	33.9	51.1
MGA_3519	LOCUS_35180	sequence1:3722969..3723160(+)	internal_stop_codon	3722837..3722839(+)		WP_087902221.1	IS3-like element IS987 family transposase	71.4	10.7	51.1
MGA_3524	LOCUS_35230	sequence1:3727561..3728010(+)	partial			WP_083125798.1	IS481 family transposase	87.2	30.8	32.3
MGA_3525	LOCUS_35240	sequence1:3728024..3728269(+)	partial			WP_003899493.1	transposase	90.1	67.6	75.3
MGA_3529	LOCUS_35280	sequence1:3732122..3732520(+)	partial			WP_087902221.1	IS3-like element IS987 family transposase	78.8	24.8	83.7
MGA_3530	LOCUS_35290	sequence1:3732558..3732854(+)	frameshift		3732890,3732845	WP_076611786.1	IS3-like element ISMsm7 family transposase	100.0	25.4	90.8
MGA_3531	LOCUS_35300	sequence1:3732901..3733194(+)	frameshift		3732890,3732851	WP_076611786.1	IS3-like element ISMsm7 family transposase	85.6	21.5	85.5
MGA_3534	LOCUS_35330	sequence1:3735444..3737387(+)	partial			WP_060486301.1	site-specific tyrosine recombinase XerD	19.6	40.4	33.3
MGA_3535	LOCUS_35340	sequence1:3737776..3738300(+)	partial			WP_076611786.1	IS3-like element ISMsm7 family transposase	100.0	45.1	90.2
MGA_3540	LOCUS_35390	sequence1:3743178..3743645(-)	partial			WP_011730262.1	DUF305 domain-containing protein	100.0	66.2	51.9
MGA_3541	LOCUS_35400	sequence1:3744456..3745076(-)	partial			WP_164929392.1	IS3-like element ISGvi5 family transposase	70.4	36.4	53.7
MGA_3543	LOCUS_35420	sequence1:3747012..3747413(-)	frameshift		3747511	WP_211285741.1	IS3 family transposase	82.0	28.9	34.5
MGA_3544	LOCUS_35430	sequence1:3747482..3747769(-)	frameshift		3747499	WP_076611786.1	IS3-like element ISMsm7 family transposase	94.7	24.4	35.1
MGA_3546	LOCUS_35450	sequence1:3748455..3748892(+)	frameshift,internal_stop_codon	3748914..3748916(+)	3748889,3749033	WP_005112734.1	M56 family metallopeptidase	100.0	46.2	46.2
MGA_3555	LOCUS_35540	sequence1:3757585..3759420(-)	partial			WP_011142593.1	NADH-quinone oxidoreductase subunit L	55.8	57.9	32.1
MGA_3560	LOCUS_35590	sequence1:3762514..3762858(-)	partial			WP_000179273.1	NADH-quinone oxidoreductase subunit NuoA	66.7	62.3	42.1
MGA_3572	LOCUS_35710	sequence1:3772790..3773218(+)	partial			WP_011030938.1	heavy metal translocating P-type ATPase	86.6	19.3	65.9
MGA_3576	LOCUS_35750	sequence1:3774806..3775903(+)	frameshift,internal_stop_codon	3775901..3775903(+)	3775924	WP_010950755.1	ACR3 family arsenite efflux transporter	95.6	70.1	87.7
MGA_3612	LOCUS_36110	sequence1:3812592..3812936(+)	partial			WP_010950905.1	PE family protein	98.2	7.7	52.7
MGA_3707	LOCUS_37050	sequence1:3934614..3935606(-)	partial			WP_004566323.1	TauD/TfdA family dioxygenase	81.5	73.9	31.6
MGA_3709	LOCUS_37070	sequence1:3936596..3937264(-)	partial			WP_003972681.1	allantoin degradation transcriptional regulator AllR	61.3	50.0	40.3
MGA_3710	LOCUS_37080	sequence1:3937347..3937898(-)	partial			WP_014206709.1	dienelactone hydrolase family protein	78.1	34.4	43.4
MGA_3733	LOCUS_37310	sequence1:3960518..3960745(-)	partial			WP_003412942.1	DUF3618 domain-containing protein	68.0	68.0	74.5
MGA_3735	LOCUS_37330	sequence1:3961331..3961867(+)	partial			WP_003401619.1	DUF3060 domain-containing protein	41.0	33.2	52.1
MGA_3748	LOCUS_37460	sequence1:3984085..3984525(-)	partial			WP_005064825.1	MaoC family dehydratase	62.3	70.0	40.7
MGA_3763	LOCUS_37610	sequence1:3999481..4000977(-)	partial			WP_005113178.1	MinD/ParA family protein	66.1	52.7	64.0
MGA_3768	LOCUS_37660	sequence1:4004189..4005583(+)	partial			WP_005056137.1	C40 family peptidase	49.8	47.1	25.2
MGA_3784	LOCUS_37820	sequence1:4026320..4026637(+)	partial			WP_003899734.1	transcriptional regulator WhiB6	65.7	58.6	63.8
MGA_3787	LOCUS_37850	sequence1:4027600..4033455(+)	partial			WP_003911742.1	alpha/beta hydrolase	19.4	58.8	32.0
MGA_3791	LOCUS_37890	sequence1:4036147..4036488(+)	partial			WP_011727849.1	hypothetical protein	73.5	79.4	37.9
MGA_3806	LOCUS_38040	sequence1:4051120..4051950(+)	partial			WP_003407157.1	membrane protein	63.0	66.7	73.6
MGA_3822	LOCUS_38200	sequence1:4066203..4067336(-)	partial			WP_010886153.1	alpha/beta hydrolase	72.4	65.9	30.7
MGA_3833	LOCUS_38310	sequence1:4077652..4078665(-)	partial			WP_006311526.1	4-hydroxy-tetrahydrodipicolinate synthase	43.0	47.3	28.3
MGA_3910	LOCUS_39080	sequence1:4163839..4165326(+)	partial			WP_010950570.1	PE domain-containing protein	40.8	18.1	40.1
MGA_3911	LOCUS_39090	sequence1:4165321..4165887(-)	partial			WP_003411608.1	hypothetical protein	72.3	80.8	47.1
MGA_3932	LOCUS_39300	sequence1:4188456..4189523(+)	partial			WP_003905037.1	IS110 family transposase	93.2	58.6	35.6
MGA_3942	LOCUS_39400	sequence1:4198369..4200150(+)	partial			WP_010886110.1	serine/threonine protein kinase PknH	70.3	68.2	72.9
MGA_3943	LOCUS_39410	sequence1:4200278..4201993(+)	partial			WP_010950514.1	serine/threonine-protein kinase PknH/PknJ	68.7	66.6	67.2
MGA_3944	LOCUS_39420	sequence1:4201990..4204338(+)	partial			WP_030872986.1	FHA domain-containing protein	79.4	72.8	45.2
MGA_3946	LOCUS_39440	sequence1:4206384..4206965(-)	internal_stop_codon	4206984..4206986(-)		WP_003406375.1	transcriptional regulator AbmR	99.0	82.7	82.2
MGA_3947	LOCUS_39450	sequence1:4207213..4207827(-)	frameshift		4207871	WP_003406372.1	adenylate cyclase	95.1	49.6	78.7
MGA_3948	LOCUS_39460	sequence1:4207824..4208348(-)	frameshift		4207871	WP_003406372.1	adenylate cyclase	85.1	37.3	79.7
MGA_3952	LOCUS_39500	sequence1:4210837..4214784(+)	partial			WP_011037666.1	bifunctional diguanylate cyclase/phosphodiesterase	33.5	54.9	36.7
MGA_3981	LOCUS_39790	sequence1:4249613..4250242(+)	partial			WP_003406288.1	DUF4190 domain-containing protein	42.1	43.9	43.2
MGA_3989	LOCUS_39870	sequence1:4257046..4257426(-)	partial			WP_003406258.1	anti-sigma E factor RseA	88.1	72.1	86.5
MGA_4016	LOCUS_40140	sequence1:4288056..4288598(+)	frameshift,internal_stop_codon	4288596..4288598(+)	4288616	WP_013224382.1	OB-fold domain-containing protein	88.3	50.3	42.8
MGA_4017	LOCUS_40150	sequence1:4288598..4288999(+)	frameshift,internal_stop_codon	4288596..4288598(+)	4288616	WP_013224382.1	OB-fold domain-containing protein	95.5	41.7	45.3
MGA_4026	LOCUS_40240	sequence1:4298097..4298564(+)	partial			WP_005114615.1	DUF4190 domain-containing protein	40.6	20.5	53.1
MGA_4030	LOCUS_40280	sequence1:4302376..4302543(+)	partial			WP_005081166.1	hypothetical protein	60.0	64.7	63.6
MGA_4043	LOCUS_40410	sequence1:4316338..4318635(-)	partial			WP_010886071.1	PE family protein	35.9	27.7	33.9
MGA_4052	LOCUS_40500	sequence1:4329986..4330315(-)	partial			WP_013229630.1	DUF3761 domain-containing protein	61.5	39.1	50.7
MGA_4055	LOCUS_40530	sequence1:4332038..4332859(+)	frameshift,internal_stop_codon	4332866..4332868(+),4332857..4332859(+)	4332886	WP_003406075.1	hypothetical protein	48.0	57.7	60.6
MGA_4056	LOCUS_40540	sequence1:4332906..4334015(+)	partial			WP_172591911.1	hypothetical protein	38.2	41.2	84.4
MGA_4062	LOCUS_40600	sequence1:4336235..4336735(+)	frameshift		4336217	WP_009936776.1	DUF1697 domain-containing protein	99.4	79.8	75.9
MGA_4080	LOCUS_40780	sequence1:4352850..4353329(+)	frameshift		4353191	WP_011728944.1	MerR family transcriptional regulator	69.2	40.1	52.3
MGA_4089	LOCUS_40870	sequence1:4361351..4363078(-)	partial			WP_110170977.1	VWA domain-containing protein	50.3	44.1	33.3
MGA_4098	LOCUS_40960	sequence1:4374729..4375901(+)	partial			WP_010867504.1	tyrosine recombinase XerA	54.6	65.4	28.2
MGA_4099	LOCUS_40970	sequence1:4375913..4378390(+)	partial			WP_193484808.1	hypothetical protein	9.6	58.0	46.2
MGA_4112	LOCUS_41100	sequence1:4392622..4393689(+)	partial			WP_003905037.1	IS110 family transposase	93.2	58.6	35.6
MGA_4125	LOCUS_41230	sequence1:4405331..4406023(+)	internal_stop_codon	4405307..4405309(+),4405280..4405282(+)		WP_003898734.1	hypothetical protein	97.8	78.7	80.4
MGA_4127	LOCUS_41250	sequence1:4406844..4407332(-)	partial			WP_003898733.1	hypothetical protein	75.9	53.0	78.9
MGA_4129	LOCUS_41270	sequence1:4408169..4408594(+)	partial			WP_003406566.1	DUF732 domain-containing protein	63.8	77.0	33.3
MGA_4132	LOCUS_41300	sequence1:4409829..4410239(-)	partial			WP_004266264.1	DUF1801 domain-containing protein	80.9	71.2	53.6
MGA_4166	LOCUS_41640	sequence1:4444354..4445028(-)	partial			WP_003405732.1	RDD family protein	74.6	69.6	79.0
MGA_4177	LOCUS_41750	sequence1:4456242..4456484(+)	partial			WP_003405645.1	lipoprotein LpqV	100.0	57.6	68.8
MGA_4184	LOCUS_41820	sequence1:4463185..4463742(-)	frameshift		4463870	WP_003900263.1	DUF427 domain-containing protein	100.0	72.8	81.6
MGA_4189	LOCUS_41870	sequence1:4465635..4467230(-)	partial			WP_011388984.1	esterase-like activity of phytase family protein	67.4	83.1	27.9
MGA_4193	LOCUS_41910	sequence1:4470667..4470975(+)	partial			WP_010950431.1	SHOCT domain-containing protein	100.0	40.8	37.5
MGA_4194	LOCUS_41920	sequence1:4471470..4474130(-)	partial			WP_162013089.1	tetratricopeptide repeat protein	41.4	53.9	23.5
MGA_4226	LOCUS_42240	sequence1:4513104..4513805(+)	frameshift		4513631	WP_003405324.1	HAMP domain-containing sensor histidine kinase	75.1	34.4	66.9
MGA_4227	LOCUS_42250	sequence1:4513742..4514554(+)	frameshift		4513631	WP_003405324.1	HAMP domain-containing sensor histidine kinase	100.0	53.0	77.8
MGA_4237	LOCUS_42350	sequence1:4526671..4528614(+)	partial			WP_060486301.1	site-specific tyrosine recombinase XerD	19.6	40.4	33.3
MGA_4269	LOCUS_42670	sequence1:4563102..4564046(+)	frameshift		4563965	WP_003901258.1	PPE family protein	86.0	67.7	37.1
MGA_4273	LOCUS_42710	sequence1:4566277..4567119(+)	partial			WP_012257358.1	WecB/TagA/CpsF family glycosyltransferase	81.1	45.5	35.3
MGA_4276	LOCUS_42740	sequence1:4570121..4572169(+)	partial			WP_003893217.1	glycosyltransferase family 2 protein	35.2	82.4	30.2
MGA_4280	LOCUS_42780	sequence1:4575592..4576485(+)	partial			WP_005081985.1	FkbM family methyltransferase	51.9	64.9	35.8
MGA_4281	LOCUS_42790	sequence1:4576500..4578002(+)	partial			WP_010889293.1	tyrosine-protein kinase domain-containing protein	58.4	55.2	27.3
MGA_4286	LOCUS_42840	sequence1:4584354..4585148(+)	partial			WP_164921539.1	FkbM family methyltransferase	55.7	65.2	33.1
MGA_4291	LOCUS_42890	sequence1:4589157..4590143(+)	frameshift,internal_stop_codon	4590147..4590149(+)	4590065,4590281,4590221	WP_003910253.1	hypothetical protein	73.2	48.2	39.3
MGA_4294	LOCUS_42920	sequence1:4593202..4593555(+)	frameshift		4593011	WP_005114156.1	hypothetical protein	82.9	35.5	61.6
MGA_4315	LOCUS_43130	sequence1:4609431..4610837(+)	partial			WP_011031291.1	PIN domain-containing protein	54.5	45.6	24.2
MGA_4320	LOCUS_43180	sequence1:4616088..4617233(-)	partial			WP_011861579.1	site-specific integrase	70.3	71.8	24.4
MGA_4328	LOCUS_43260	sequence1:4625066..4625410(+)	partial			WP_010907580.1	zinc ribbon domain-containing protein	71.1	81.8	71.6
MGA_4343	LOCUS_43410	sequence1:4640782..4641096(+)	partial			WP_003404920.1	hypothetical protein	93.3	71.2	57.6
MGA_4361	LOCUS_43590	sequence1:4661962..4662375(+)	frameshift,internal_stop_codon	4661998..4662000(+)	4662009,4661958	WP_011730597.1	hypothetical protein	83.2	50.2	62.3
MGA_4363	LOCUS_43610	sequence1:4665119..4665388(+)	partial			WP_010907562.1	chorismate mutase	86.5	74.3	82.1
MGA_4367	LOCUS_43650	sequence1:4668879..4669178(-)	partial			WP_010950597.1	PE family protein	100.0	15.9	61.6
MGA_4369	LOCUS_43670	sequence1:4670176..4671081(+)	partial			WP_011730613.1	diiron oxygenase	100.0	73.1	74.8
MGA_4373	LOCUS_43710	sequence1:4674298..4674837(-)	frameshift		4674875	WP_005086691.1	enoyl-CoA hydratase/isomerase family protein	95.0	63.0	47.6
MGA_4374	LOCUS_43720	sequence1:4674786..4675115(-)	frameshift		4674872	WP_010919717.1	enoyl-CoA hydratase/isomerase	86.2	39.3	40.0
MGA_4396	LOCUS_43940	sequence1:4699348..4699986(+)	partial			WP_003909837.1	hypothetical protein	100.0	50.1	50.5
MGA_4397	LOCUS_43950	sequence1:4700059..4701015(-)	partial			WP_014877012.1	hypothetical protein	52.5	60.5	29.9
MGA_4402	LOCUS_44000	sequence1:4703281..4704459(-)	partial			WP_109721882.1	AAA family ATPase	59.4	33.8	37.1
MGA_4408	LOCUS_44060	sequence1:4709456..4710091(+)	frameshift		4709374,4709350	WP_005110186.1	hypothetical protein	85.8	67.3	29.2
MGA_4411	LOCUS_44090	sequence1:4713372..4714094(+)	partial			WP_204525119.1	IS30-like element ISCfr4 family transposase	97.1	58.3	40.7
MGA_4413	LOCUS_44110	sequence1:4716268..4716675(+)	partial			WP_114555269.1	IS30 family transposase	89.6	36.0	59.5
MGA_4443	LOCUS_44410	sequence1:4744598..4744876(-)	partial			WP_003404614.1	DUF2537 domain-containing protein	73.9	72.3	77.9
MGA_4457	LOCUS_44550	sequence1:4756026..4756877(+)	partial			WP_003900223.1	resuscitation-promoting factor protein RpfA	60.8	40.5	67.4
MGA_4484	LOCUS_44820	sequence1:4781875..4782855(-)	partial			WP_011730075.1	membrane protein	69.6	73.9	45.2
MGA_4498	LOCUS_44960	sequence1:4793520..4794257(+)	partial			WP_011730075.1	membrane protein	82.9	68.0	35.5
MGA_4499	LOCUS_44970	sequence1:4794254..4794868(+)	partial			WP_003407152.1	membrane protein	74.5	69.1	49.3
MGA_4568	LOCUS_45660	sequence1:4861156..4861608(-)	frameshift		4861637	WP_003896962.1	sugar porter family MFS transporter	100.0	31.8	81.3
MGA_4569	LOCUS_45670	sequence1:4861584..4862561(-)	frameshift		4861637	WP_003896962.1	sugar porter family MFS transporter	94.5	65.2	75.9
MGA_4588	LOCUS_45860	sequence1:4886554..4887663(-)	frameshift		4887616	WP_003898611.1	sensor histidine kinase	94.9	82.6	67.5
MGA_4596	LOCUS_45940	sequence1:4892896..4894218(-)	partial			WP_011338147.1	VWA domain-containing protein	66.1	47.4	29.1
MGA_4634	LOCUS_46320	sequence1:4934147..4936090(+)	partial			WP_060486301.1	site-specific tyrosine recombinase XerD	19.6	40.4	33.3
MGA_4641	LOCUS_46390	sequence1:4940292..4940693(-)	partial			WP_003416786.1	IS30 family transposase	100.0	38.7	63.2
MGA_4644	LOCUS_46420	sequence1:4943746..4944057(-)	partial			WP_013222026.1	IS110 family transposase	77.7	19.9	53.8
MGA_4646	LOCUS_46440	sequence1:4945197..4945916(+)	frameshift		4945490,4945571,4945045	WP_178372834.1	IS256 family transposase	78.2	45.8	32.8
MGA_4650	LOCUS_46480	sequence1:4949015..4949413(+)	partial			WP_008783747.1	IS30-like element ISBlo4 family transposase	90.2	28.1	55.5
MGA_4651	LOCUS_46490	sequence1:4949407..4949955(-)	partial			WP_169733975.1	IS256 family transposase	83.0	37.0	66.2
MGA_4654	LOCUS_46520	sequence1:4952626..4952940(-)	partial			WP_003414195.1	hypothetical protein	96.2	49.0	71.0
MGA_4655	LOCUS_46530	sequence1:4953281..4953730(-)	frameshift,internal_stop_codon	4953805..4953807(-)	4953966	WP_085976166.1	IS3 family transposase	91.9	35.2	39.1
MGA_4658	LOCUS_46560	sequence1:4954920..4955909(+)	frameshift		4955928,4955723	WP_003903345.1	succinyldiaminopimelate transaminase	76.0	69.1	81.6
MGA_4660	LOCUS_46580	sequence1:4956155..4956433(+)	partial			WP_000254889.1	APC family permease	62.0	8.9	52.6
MGA_4661	LOCUS_46590	sequence1:4956430..4956960(+)	frameshift		4956819	WP_189742800.1	APC family permease	80.7	22.9	43.3
MGA_4663	LOCUS_46610	sequence1:4958637..4958807(+)	partial			WP_003414201.1	ExeA family protein	96.4	20.0	90.7
MGA_4664	LOCUS_46620	sequence1:4958868..4959815(+)	partial			WP_107417457.1	IS481 family transposase	90.8	46.9	66.1
MGA_4665	LOCUS_46630	sequence1:4959910..4961082(+)	partial			WP_010867504.1	tyrosine recombinase XerA	54.6	65.4	28.2
MGA_4666	LOCUS_46640	sequence1:4961094..4963571(+)	partial			WP_193484808.1	hypothetical protein	9.6	58.0	46.2
MGA_4669	LOCUS_46670	sequence1:4964254..4965159(+)	partial			WP_107417457.1	IS481 family transposase	96.3	47.7	33.3
MGA_4670	LOCUS_46680	sequence1:4965292..4965699(+)	partial			WP_003418125.1	IS21-like element ISMt2 family helper ATPase IstB	91.1	49.4	38.7
MGA_4681	LOCUS_46790	sequence1:4977705..4978187(+)	frameshift		4978130	WP_003911958.1	DDE-type integrase/transposase/recombinase	66.2	27.6	84.0
MGA_4682	LOCUS_46800	sequence1:4978138..4978965(+)	frameshift		4978130	WP_003911958.1	DDE-type integrase/transposase/recombinase	100.0	71.6	82.2
MGA_4683	LOCUS_46810	sequence1:4978988..4979305(+)	partial			WP_050754218.1	DDE-type integrase/transposase/recombinase	71.4	19.9	55.8
MGA_4684	LOCUS_46820	sequence1:4979365..4979811(+)	partial			WP_169733975.1	IS256 family transposase	83.8	30.4	62.1
MGA_4685	LOCUS_46830	sequence1:4979823..4980140(-)	partial			WP_010950468.1	IS256-like element IS1554 family transposase	61.9	14.8	81.5
MGA_4687	LOCUS_46850	sequence1:4980555..4980806(-)	partial			WP_011729600.1	tyrosine-type recombinase/integrase	83.1	9.4	68.6
MGA_4689	LOCUS_46870	sequence1:4983262..4983714(-)	partial			WP_189955127.1	site-specific integrase	58.7	22.1	45.5
MGA_4693	LOCUS_46910	sequence1:4987973..4988845(-)	partial			WP_189955127.1	site-specific integrase	91.7	65.3	38.3
MGA_4694	LOCUS_46920	sequence1:4988872..4990317(-)	frameshift		4990435	WP_011729600.1	tyrosine-type recombinase/integrase	97.5	63.2	71.4
MGA_4695	LOCUS_46930	sequence1:4990415..4990942(-)	frameshift		4990438	WP_011729600.1	tyrosine-type recombinase/integrase	96.6	22.8	65.1
MGA_4696	LOCUS_46940	sequence1:4990939..4991436(-)	partial			WP_014877954.1	site-specific integrase	100.0	45.0	77.7
MGA_4700	LOCUS_46980	sequence1:4995890..4996510(-)	partial			WP_014877954.1	site-specific integrase	93.2	52.0	72.9
MGA_4703	LOCUS_47010	sequence1:4998842..5000785(+)	partial			WP_060486301.1	site-specific tyrosine recombinase XerD	19.6	40.4	33.3
MGA_4704	LOCUS_47020	sequence1:5000980..5001750(-)	frameshift		5001968,5001784	WP_003404757.1	IS256-like element IS1554 family transposase	66.4	38.7	65.9
MGA_4705	LOCUS_47030	sequence1:5001939..5002286(-)	frameshift		5001784,5001971	WP_010950468.1	IS256-like element IS1554 family transposase	90.4	24.1	59.8
MGA_4708	LOCUS_47060	sequence1:5003989..5004606(-)	partial			WP_010970125.1	site-specific tyrosine recombinase XerD	84.9	49.5	32.8
MGA_4721	LOCUS_47190	sequence1:5016444..5017085(+)	partial			WP_070909991.1	metal-dependent hydrolase	100.0	74.6	62.4
MGA_4722	LOCUS_47200	sequence1:5017116..5017490(+)	frameshift		5017503,5017391	WP_005081992.1	metal-dependent hydrolase	60.5	24.8	70.7
MGA_4723	LOCUS_47210	sequence1:5017487..5018023(+)	frameshift		5017515,5017391	WP_070909991.1	metal-dependent hydrolase	95.5	60.6	59.5
MGA_4726	LOCUS_47240	sequence1:5020585..5022348(-)	partial			WP_041608957.1	transposase	36.8	72.0	45.8
MGA_4727	LOCUS_47250	sequence1:5022457..5022792(+)	partial			WP_011071113.1	IS1595-like element ISSod11 family transposase	54.1	19.2	52.5
MGA_4730	LOCUS_47280	sequence1:5024750..5025490(+)	frameshift		5024750	WP_003417892.1	trehalose-phosphatase	98.8	62.1	72.4
MGA_4735	LOCUS_47330	sequence1:5027458..5027979(+)	frameshift		5027814	WP_003417932.1	histidine phosphatase family protein	68.8	50.4	60.5
MGA_4736	LOCUS_47340	sequence1:5027937..5028116(+)	frameshift		5027814	WP_003417932.1	histidine phosphatase family protein	96.6	24.2	71.9
MGA_4737	LOCUS_47350	sequence1:5028255..5028899(+)	partial			WP_010950834.1	transposase	73.8	81.9	75.3
MGA_4755	LOCUS_47530	sequence1:5051029..5051295(-)	partial			WP_013223345.1	IS3 family transposase	56.8	17.0	71.2
MGA_4760	LOCUS_47580	sequence1:5055100..5057043(-)	partial			WP_060486301.1	site-specific tyrosine recombinase XerD	19.6	40.4	33.3
MGA_4763	LOCUS_47610	sequence1:5059651..5060052(-)	partial			WP_003416786.1	IS30 family transposase	100.0	38.7	63.2
MGA_4768	LOCUS_47660	sequence1:5064932..5066008(-)	partial			WP_000390088.1	site-specific tyrosine recombinase XerD	69.8	72.3	29.6
MGA_4771	LOCUS_47690	sequence1:5068564..5069145(-)	partial			WP_003419329.1	TetR family transcriptional regulator KstR2	59.6	59.5	31.1
MGA_4775	LOCUS_47730	sequence1:5073967..5074512(+)	frameshift,internal_stop_codon	5073856..5073858(+)	5074329,5074447	WP_003898915.1	RND transporter MmpL12	72.4	11.4	46.6
MGA_4776	LOCUS_47740	sequence1:5074503..5075900(+)	frameshift		5074329,5075774,5074447	WP_235623866.1	RND family transporter	90.8	41.4	31.8
MGA_4777	LOCUS_47750	sequence1:5075804..5076376(+)	frameshift		5075768	WP_005086426.1	RND family transporter	97.4	18.6	56.2
MGA_4779	LOCUS_47770	sequence1:5076568..5076930(-)	partial			WP_010940871.1	PaaI family thioesterase	83.3	62.3	32.7
MGA_4787	LOCUS_47850	sequence1:5084394..5085641(+)	frameshift,internal_stop_codon	5085640..5085642(+)	5084289	WP_003899145.1	carboxylesterase/lipase family protein	99.8	81.0	65.9
MGA_4791	LOCUS_47890	sequence1:5090572..5091756(+)	partial			WP_013227554.1	hypothetical protein	66.2	66.2	29.6
MGA_4802	LOCUS_48000	sequence1:5103461..5104087(+)	frameshift,internal_stop_codon	5104085..5104087(+)	5104288	WP_011014093.1	ISL3-like element IS31831 family transposase	99.0	47.7	45.7
MGA_4803	LOCUS_48010	sequence1:5104118..5104420(+)	frameshift,internal_stop_codon	5104676..5104678(+),5104085..5104087(+)	5104288,5104582	WP_141270575.1	ISL3-like element ISAar39 family transposase	57.0	13.1	77.2
MGA_4804	LOCUS_48020	sequence1:5104306..5104662(+)	frameshift,internal_stop_codon	5104676..5104678(+),5104085..5104087(+)	5104288,5104582	WP_015776578.1	ISL3 family transposase	83.9	22.7	47.5
MGA_4813	LOCUS_48110	sequence1:5114571..5115413(-)	partial			WP_070909991.1	metal-dependent hydrolase	41.1	40.5	67.0
MGA_4815	LOCUS_48130	sequence1:5117581..5117889(-)	frameshift,internal_stop_codon	5117581..5117583(-)	5117520,5118026,5117556,5117653	WP_087902221.1	IS3-like element IS987 family transposase	100.0	37.6	46.8
MGA_4819	LOCUS_48170	sequence1:5121937..5122236(-)	partial			WP_087902221.1	IS3-like element IS987 family transposase	91.9	21.9	75.0
MGA_4820	LOCUS_48180	sequence1:5122784..5123107(+)	frameshift,internal_stop_codon	5122585..5122587(+)	5122762,5122554,5122650	WP_011727856.1	IS256 family transposase	100.0	24.6	80.6
MGA_4823	LOCUS_48210	sequence1:5125073..5125852(-)	frameshift		5125878	WP_187436542.1	IS256 family transposase	79.5	46.4	33.2
MGA_4825	LOCUS_48230	sequence1:5126893..5127729(-)	frameshift		5127848	WP_211285741.1	IS3 family transposase	100.0	72.7	87.5
MGA_4830	LOCUS_48280	sequence1:5132128..5132574(-)	internal_stop_codon	5132614..5132616(-)		WP_003900518.1	IS110 family transposase	99.3	44.4	48.6
MGA_4831	LOCUS_48290	sequence1:5132614..5132886(-)	internal_stop_codon	5132614..5132616(-)		WP_000453500.1	IS110 family transposase	82.2	29.6	44.0
MGA_4832	LOCUS_48300	sequence1:5133361..5133528(-)	partial			WP_169733975.1	IS256 family transposase	90.9	12.3	56.0
MGA_4838	LOCUS_48360	sequence1:5141049..5142248(+)	frameshift,internal_stop_codon	5141757..5141759(+)	5141934,5141819,5141092,5141726	WP_011727856.1	IS256 family transposase	70.7	64.2	70.6
MGA_4839	LOCUS_48370	sequence1:5142344..5142931(-)	frameshift		5142817,5142965,5143143	WP_003899731.1	FAD-containing monooxygenase EthA	55.4	23.3	53.5
MGA_4840	LOCUS_48380	sequence1:5142963..5143211(-)	frameshift		5142811,5143146,5142971	WP_011088683.1	NAD(P)/FAD-dependent oxidoreductase	93.9	16.4	42.5
MGA_4851	LOCUS_48490	sequence1:5157548..5158000(-)	frameshift,internal_stop_codon	5158289..5158291(-)	5158225,5158043,5158113	WP_011727856.1	IS256 family transposase	45.3	15.5	80.9
MGA_4852	LOCUS_48500	sequence1:5157997..5158542(-)	frameshift,internal_stop_codon	5158288..5158290(-)	5158320,5158042,5158227,5158112	WP_011727856.1	IS256 family transposase	79.6	32.8	61.1
MGA_4853	LOCUS_48510	sequence1:5158594..5158998(-)	partial			WP_010929743.1	Zn-ribbon domain-containing OB-fold protein	78.4	73.0	41.9
MGA_4859	LOCUS_48570	sequence1:5163382..5163717(+)	partial			WP_014207710.1	DUF1446 domain-containing protein	89.2	17.0	41.2
MGA_4862	LOCUS_48600	sequence1:5165586..5166026(+)	frameshift		5165533	WP_012296509.1	alpha/beta hydrolase	97.9	44.5	67.1
MGA_4866	LOCUS_48640	sequence1:5169599..5170039(-)	frameshift		5170217	WP_003898701.1	IS5 family transposase	90.4	46.0	81.1
MGA_4868	LOCUS_48660	sequence1:5171608..5171979(-)	partial			WP_003422389.1	IS5 family transposase	80.5	73.3	83.8
MGA_4869	LOCUS_48670	sequence1:5171993..5172670(-)	frameshift		5172708	WP_110107303.1	IS1380 family transposase	92.4	42.5	43.4
MGA_4873	LOCUS_48710	sequence1:5178590..5178754(-)	partial			WP_003402286.1	DUF5078 domain-containing protein	85.2	31.1	66.0
MGA_4879	LOCUS_48770	sequence1:5186105..5186704(+)	partial			WP_013226070.1	TetR/AcrR family transcriptional regulator	43.2	41.0	43.0
MGA_4881	LOCUS_48790	sequence1:5187711..5188580(+)	partial			WP_003416786.1	IS30 family transposase	66.8	56.1	78.2
MGA_4883	LOCUS_48810	sequence1:5190763..5191152(+)	partial			WP_003416786.1	IS30 family transposase	100.0	37.5	85.3
MGA_4891	LOCUS_48890	sequence1:5197875..5198807(+)	partial			WP_010867504.1	tyrosine recombinase XerA	65.8	61.5	28.4
MGA_4908	LOCUS_49060	sequence1:5216482..5222400(+)	partial			WP_028385425.1	Ti-type conjugative transfer relaxase TraA	20.6	44.1	23.4
MGA_4909	LOCUS_49070	sequence1:5222607..5224163(+)	partial			WP_236615816.1	serine/threonine-protein kinase	51.2	46.3	31.3
MGA_4929	LOCUS_49270	sequence1:5246561..5248198(-)	partial			WP_003408854.1	type VII secretion system ESX-5 serine protease mycosin MycP5	61.1	57.4	50.7
MGA_4935	LOCUS_49330	sequence1:5253002..5254483(-)	partial			WP_003900505.1	PPE family protein	32.7	41.2	36.7
MGA_4938	LOCUS_49360	sequence1:5255445..5257199(-)	frameshift		5257209	WP_041322832.1	type VII secretion protein EccC	99.0	40.4	35.4
MGA_4939	LOCUS_49370	sequence1:5257207..5258544(-)	frameshift		5257224,5258554,5257187,5257159	WP_013224114.1	type VII secretion protein EccC	97.3	30.4	33.6
MGA_4940	LOCUS_49380	sequence1:5258534..5259649(-)	frameshift		5258563	WP_014002018.1	type VII secretion system ESX-2 FtsK/SpoIIIE family ATPase EccC2	92.5	25.4	34.3
MGA_4944	LOCUS_49420	sequence1:5262540..5264894(-)	partial			WP_012296241.1	hypothetical protein	37.5	37.6	37.0
MGA_4960	LOCUS_49580	sequence1:5280273..5280758(-)	partial			WP_003414511.1	transcription termination factor NusA	83.9	39.2	47.8
MGA_4964	LOCUS_49620	sequence1:5282452..5283492(-)	partial			WP_003400393.1	C40 family peptidase	31.8	39.1	56.4
MGA_4965	LOCUS_49630	sequence1:5283552..5284634(-)	partial			WP_003917259.1	hypothetical protein	34.7	41.4	65.6
MGA_4966	LOCUS_49640	sequence1:5284910..5285800(-)	partial			WP_013389864.1	ParB/RepB/Spo0J family partition protein	50.0	30.5	31.6
MGA_4971	LOCUS_49690	sequence1:5290194..5292137(-)	partial			WP_060486301.1	site-specific tyrosine recombinase XerD	19.6	40.4	33.3
MGA_4993	LOCUS_49910	sequence1:5315387..5316928(+)	partial			WP_010950514.1	serine/threonine-protein kinase PknH/PknJ	36.3	31.0	34.4
MGA_5007	LOCUS_50050	sequence1:5330562..5330861(-)	frameshift		5330869	WP_003906521.1	HNH endonuclease signature motif containing protein	97.0	21.3	76.0
MGA_5013	LOCUS_50110	sequence1:5336111..5336812(+)	frameshift,internal_stop_codon	5336810..5336812(+)	5336821	WP_011728203.1	TetR/AcrR family transcriptional regulator	87.1	45.9	67.0
MGA_5014	LOCUS_50120	sequence1:5336827..5337444(+)	frameshift,internal_stop_codon	5336810..5336812(+)	5336821	WP_011728203.1	TetR/AcrR family transcriptional regulator	97.1	44.9	54.8
MGA_5023	LOCUS_50210	sequence1:5343506..5343985(+)	frameshift		5343488,5343510	WP_003403998.1	hypothetical protein	93.7	73.9	53.7
MGA_5029	LOCUS_50270	sequence1:5348446..5349171(-)	internal_stop_codon	5349310..5349312(-),5349382..5349384(-)		WP_010886087.1	hypothetical protein	100.0	75.9	70.7
MGA_5044	LOCUS_50420	sequence1:5365432..5367012(+)	partial			WP_011729255.1	serine/threonine-protein kinase	58.4	62.5	60.2
MGA_5046	LOCUS_50440	sequence1:5368327..5368734(-)	partial			WP_051618907.1	MarR family winged helix-turn-helix transcriptional regulator	68.9	56.6	35.1
MGA_5067	LOCUS_50650	sequence1:5388439..5390064(-)	partial			WP_003403850.1	phosphoglycerate mutase PE_PGRS11	51.9	49.3	70.6
MGA_5074	LOCUS_50720	sequence1:5393194..5395359(-)	partial			WP_011727491.1	bifunctional serine/threonine-protein kinase/transporter substrate-binding domain-containing protein	37.3	44.4	64.8
MGA_5128	LOCUS_51260	sequence1:5447856..5448017(-)	partial			WP_005084617.1	hypothetical protein	88.7	37.4	41.0
MGA_5152	LOCUS_51500	sequence1:5470469..5472343(-)	partial			WP_003899118.1	PecA family PE domain-processing aspartic protease	56.7	67.7	32.8
MGA_5155	LOCUS_51530	sequence1:5474368..5475513(-)	partial			WP_005113186.1	DUF4878 domain-containing protein	73.2	69.5	41.8
MGA_5164	LOCUS_51620	sequence1:5484696..5485208(+)	partial			WP_003894735.1	hypothetical protein	54.7	72.2	32.3
MGA_5183	LOCUS_51810	sequence1:5503456..5503920(-)	partial			WP_003410786.1	PE family protein	90.9	27.3	33.6
MGA_5201	LOCUS_51990	sequence1:5521990..5527866(-)	partial			WP_011031572.1	helix-turn-helix transcriptional regulator	21.2	42.4	32.9
MGA_5204	LOCUS_52020	sequence1:5529250..5529459(-)	partial			WP_005065012.1	CbtB-domain containing protein	60.9	61.8	81.0
MGA_5304	LOCUS_53020	sequence1:5626537..5627499(+)	partial			WP_011403060.1	glycosyltransferase family 4 protein	68.4	59.4	30.8
MGA_5312	LOCUS_53100	sequence1:5632835..5633485(+)	frameshift		5632833	WP_013224915.1	SpoIIE family protein phosphatase	86.6	49.3	30.5
MGA_5313	LOCUS_53110	sequence1:5633482..5635695(+)	partial			WP_013227688.1	SpoIIE family protein phosphatase	84.9	45.8	43.1
MGA_5319	LOCUS_53170	sequence1:5639498..5640445(-)	partial			WP_197530111.1	SRPBCC family protein	58.1	72.8	45.9
MGA_5331	LOCUS_53290	sequence1:5650072..5650776(+)	partial			WP_050039320.1	PadR family transcriptional regulator	61.5	76.6	81.2
MGA_5344	LOCUS_53420	sequence1:5666004..5666432(-)	partial			WP_003419814.1	hypothetical protein	64.8	69.8	40.9
MGA_5360	LOCUS_53580	sequence1:5679772..5680143(-)	partial			WP_003420408.1	YbaB/EbfC family nucleoid-associated protein	75.6	69.9	82.8
MGA_5365	LOCUS_53630	sequence1:5684224..5686038(-)	partial			WP_003420417.1	DNA polymerase III subunits gamma/tau	64.7	67.6	88.0
MGA_5367	LOCUS_53650	sequence1:5687816..5688634(+)	partial			WP_003420421.1	lipid uptake coordinator LucA	50.4	53.9	74.5
MGA_5377	LOCUS_53750	sequence1:5697698..5697871(+)	partial			WP_003855652.1	CsbD family protein	80.7	74.6	62.0
MGA_5380	LOCUS_53780	sequence1:5699221..5700078(-)	partial			WP_000285450.1	HAD family hydrolase	46.0	57.8	35.3
MGA_5403	LOCUS_54010	sequence1:5724704..5725123(-)	partial			WP_013531661.1	hypothetical protein	66.2	69.0	35.3
MGA_5413	LOCUS_54110	sequence1:5734749..5735720(-)	partial			WP_013222574.1	LLM class flavin-dependent oxidoreductase	57.0	56.2	30.3
MGA_5416	LOCUS_54140	sequence1:5736958..5738196(-)	partial			WP_005809350.1	alkyl/aryl-sulfatase	70.9	67.1	31.2
MGA_5459	LOCUS_54570	sequence1:5779287..5779574(+)	partial			WP_011728011.1	YchJ family protein	92.6	68.2	50.0
MGA_5460	LOCUS_54580	sequence1:5779892..5780512(+)	partial			WP_003900538.1	tyrosine-type recombinase/integrase	86.9	53.0	43.0
MGA_5475	LOCUS_54730	sequence1:5788102..5789187(-)	partial			WP_000105143.1	exodeoxyribonuclease VIII	85.9	34.2	28.8
MGA_5503	LOCUS_55010	sequence1:5809792..5810292(+)	partial			WP_008633832.1	GTP cyclohydrolase I FolE	74.1	59.7	36.6
MGA_5530	LOCUS_55280	sequence1:5854254..5855321(-)	partial			WP_003905037.1	IS110 family transposase	93.2	58.6	35.6
MGA_5549	LOCUS_55470	sequence1:5872260..5872610(+)	frameshift,internal_stop_codon	5872608..5872610(+)	5872649	WP_003899719.1	metallopeptidase family protein	99.1	83.9	79.1
MGA_5554	LOCUS_55520	sequence1:5875751..5876662(+)	partial			WP_235624060.1	LCP family protein	96.7	68.5	68.9
MGA_5560	LOCUS_55580	sequence1:5881791..5882522(+)	frameshift,internal_stop_codon	5882671..5882673(+)	5882474	WP_003399745.1	TMEM165/GDT1 family protein	95.9	76.5	60.7
MGA_5578	LOCUS_55760	sequence1:5900921..5901211(-)	frameshift		5901242	WP_003899734.1	transcriptional regulator WhiB6	100.0	82.8	88.5
MGA_5592	LOCUS_55900	sequence1:5916220..5917149(+)	partial			WP_010907486.1	MinD/ParA family protein	96.1	50.7	69.7
MGA_5645	LOCUS_56410	sequence2:12160..13365(+)	partial			WP_034349486.1	tetracycline resistance MFS efflux pump	27.7	27.2	33.3
MGA_5650	LOCUS_56460	sequence2:15862..18252(+)	partial			WP_012296241.1	hypothetical protein	36.4	37.8	34.2
MGA_5654	LOCUS_56500	sequence2:20112..26018(-)	partial			WP_012296243.1	MobF family relaxase	42.0	70.5	28.6
